Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP17_T7_M02
(727 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0520 + 25139314-25139364,25139580-25139711,25141594-251417... 29 2.8
01_06_1470 - 37583293-37584074,37585432-37585705 29 3.8
12_02_0800 + 23299674-23299678,23299714-23299791,23299876-232999... 29 5.0
11_04_0023 - 12364211-12365014,12365841-12366019,12366391-12366568 29 5.0
01_06_0959 - 33362810-33363125,33363309-33363475,33363583-333644... 29 5.0
11_03_0171 + 11111534-11113207 28 6.6
10_07_0016 + 11826066-11826773 28 6.6
03_02_0234 + 6625417-6626184,6626314-6626339,6626435-6626531,662... 28 6.6
>03_05_0520 +
25139314-25139364,25139580-25139711,25141594-25141731,
25143191-25143241,25143662-25143751,25143854-25144000,
25144108-25144218,25144307-25144375,25144777-25145517,
25145840-25146004,25146376-25146442,25146580-25146704,
25148714-25148983,25149065-25149199,25149316-25149497,
25149669-25149744
Length = 849
Score = 29.5 bits (63), Expect = 2.8
Identities = 14/43 (32%), Positives = 24/43 (55%)
Frame = +3
Query: 96 SVSCQTMPSSVTEVPGSQGPRQSGSVIVPTDVPTHTSAVSLGS 224
+ S ++ P S + P S+ Q +VPT + T T+AVS+ +
Sbjct: 282 TASQESNPESAPQTPPSKVGSQPSVPVVPTTISTSTAAVSVSA 324
>01_06_1470 - 37583293-37584074,37585432-37585705
Length = 351
Score = 29.1 bits (62), Expect = 3.8
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = +3
Query: 90 TPSVSCQTMPSSVTEVPGSQGPRQSGS 170
TPSVS T+PSS + PG+ GS
Sbjct: 285 TPSVSVATVPSSTSSAPGNYYSSHGGS 311
>12_02_0800 + 23299674-23299678,23299714-23299791,23299876-23299920,
23300052-23300415,23300493-23300574,23300793-23300873,
23300974-23302106,23302202-23302350,23302426-23302516,
23303628-23305940
Length = 1446
Score = 28.7 bits (61), Expect = 5.0
Identities = 14/45 (31%), Positives = 25/45 (55%)
Frame = +3
Query: 123 SVTEVPGSQGPRQSGSVIVPTDVPTHTSAVSLGSVFXFLAGGCMF 257
+ +VP P+ +G +I + VPT + V++GS+ + GG F
Sbjct: 912 NAVKVPNEPKPQTAGVIISSSIVPTEGTVVTVGSI---MVGGISF 953
>11_04_0023 - 12364211-12365014,12365841-12366019,12366391-12366568
Length = 386
Score = 28.7 bits (61), Expect = 5.0
Identities = 14/49 (28%), Positives = 19/49 (38%), Gaps = 1/49 (2%)
Frame = -3
Query: 254 HTATSQETKNGTQG-DCRSVCGNVSRHNHRAGLPRALRAWYLGHTGGHR 111
H + G G DCR C NV N+ P+ + W + G R
Sbjct: 329 HKTCEVDGNTGHSGTDCRKTCENVKLMNNNGNRPQGDQGWSIAPWGRSR 377
>01_06_0959 -
33362810-33363125,33363309-33363475,33363583-33364410,
33364483-33364719,33365455-33365871,33365951-33366412,
33367197-33367382
Length = 870
Score = 28.7 bits (61), Expect = 5.0
Identities = 18/53 (33%), Positives = 25/53 (47%)
Frame = -1
Query: 199 CVGTSVGTITEPDCLGPCEPGTSVTLEGIVWHETEGVLVVNVTWRGKTYVGTL 41
C GTS G++ D GP G + TL I HE ++ + R YV T+
Sbjct: 142 CDGTSTGSLISNDGNGPVPNGANGTLHNI-GHENHPTVLRFYSLRVHDYVHTI 193
>11_03_0171 + 11111534-11113207
Length = 557
Score = 28.3 bits (60), Expect = 6.6
Identities = 18/62 (29%), Positives = 26/62 (41%), Gaps = 2/62 (3%)
Frame = +3
Query: 60 FPRHVTFTTNTPSVSCQTMPSSVTEVPGSQGPRQ--SGSVIVPTDVPTHTSAVSLGSVFX 233
FP V PS S PS+ + G+ GPRQ S+IV V +G +
Sbjct: 280 FPLQVPCRAAPPSSSTPPPPSAAGSISGAGGPRQPVKTSLIVLISVADAAGVALIGVIVV 339
Query: 234 FL 239
++
Sbjct: 340 YI 341
>10_07_0016 + 11826066-11826773
Length = 235
Score = 28.3 bits (60), Expect = 6.6
Identities = 21/51 (41%), Positives = 25/51 (49%)
Frame = +1
Query: 19 CRVACNPVGFPRKFSLATSRLQLIHLPSHARRCPPV*PRYQARRARGSPAR 171
C VA + +GF S A + P+ ARR PP PR A R R PAR
Sbjct: 165 CVVADHLLGFSLDASAAVLASRCRPPPTPARRRPPPRPRL-ASRLRPPPAR 214
>03_02_0234 + 6625417-6626184,6626314-6626339,6626435-6626531,
6627009-6627116,6627194-6627328,6627429-6627528,
6627763-6627974,6628060-6628125,6628231-6628464,
6628583-6628641,6628716-6628782,6628863-6629192,
6629267-6629335,6629417-6629503,6629605-6629692,
6630057-6630178,6630251-6630355,6630442-6630485,
6630558-6630627,6630711-6630814,6630980-6631189,
6632935-6633018,6633291-6634003,6634115-6634649,
6634703-6634789,6634826-6634970,6635049-6635125,
6635215-6635359,6635462-6635626,6635725-6635958
Length = 1761
Score = 28.3 bits (60), Expect = 6.6
Identities = 15/42 (35%), Positives = 22/42 (52%)
Frame = +3
Query: 81 TTNTPSVSCQTMPSSVTEVPGSQGPRQSGSVIVPTDVPTHTS 206
T + PS + + PSS + PGS P S P+ PT++S
Sbjct: 1133 TGSPPSSTSSSPPSSQSPPPGSSPPPASPPPSTPSAPPTNSS 1174
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,132,544
Number of Sequences: 37544
Number of extensions: 375661
Number of successful extensions: 1236
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1025
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1216
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1898162308
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -