Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP17_T7_M02
         (727 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68296-5|CAD59142.2| 1677|Caenorhabditis elegans Hypothetical pr...    31   0.84 
Z68296-4|CAA92591.3| 1838|Caenorhabditis elegans Hypothetical pr...    31   0.84 
U41263-13|AAC24428.2| 1844|Caenorhabditis elegans Hypothetical p...    29   2.6  
Z75533-3|CAA99822.1|  868|Caenorhabditis elegans Hypothetical pr...    29   3.4  
U51998-6|ABS83845.1|  825|Caenorhabditis elegans Hypothetical pr...    29   4.5  
U80031-5|AAB37615.1|  547|Caenorhabditis elegans Hypothetical pr...    28   7.8  

>Z68296-5|CAD59142.2| 1677|Caenorhabditis elegans Hypothetical protein
            C46C2.1b protein.
          Length = 1677

 Score = 31.1 bits (67), Expect = 0.84
 Identities = 17/59 (28%), Positives = 27/59 (45%)
 Frame = +3

Query: 30   VQSSRVPT*VFPRHVTFTTNTPSVSCQTMPSSVTEVPGSQGPRQSGSVIVPTDVPTHTS 206
            V  S  P+ V     + T  T  ++CQT+P+S+ + P       + S+I    VP   S
Sbjct: 1342 VSHSASPSTVVESLTSMTPQTIPLACQTVPASIGQAPAVIAAAHAASLIPNASVPQSPS 1400


>Z68296-4|CAA92591.3| 1838|Caenorhabditis elegans Hypothetical protein
            C46C2.1a protein.
          Length = 1838

 Score = 31.1 bits (67), Expect = 0.84
 Identities = 17/59 (28%), Positives = 27/59 (45%)
 Frame = +3

Query: 30   VQSSRVPT*VFPRHVTFTTNTPSVSCQTMPSSVTEVPGSQGPRQSGSVIVPTDVPTHTS 206
            V  S  P+ V     + T  T  ++CQT+P+S+ + P       + S+I    VP   S
Sbjct: 1342 VSHSASPSTVVESLTSMTPQTIPLACQTVPASIGQAPAVIAAAHAASLIPNASVPQSPS 1400


>U41263-13|AAC24428.2| 1844|Caenorhabditis elegans Hypothetical
            protein T19D12.1 protein.
          Length = 1844

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +3

Query: 117  PSSVTEVPGSQGPRQSGSVIVPTDVPTHTSAV 212
            PS  T  PG+QG  Q G++     VP  +S++
Sbjct: 1448 PSPTTRCPGTQGTTQPGTIGTTVTVPPSSSSI 1479


>Z75533-3|CAA99822.1|  868|Caenorhabditis elegans Hypothetical
           protein C54G4.4 protein.
          Length = 868

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +2

Query: 125 CDRGTRLAGPEAVRLGDCAD*RSHTHFC 208
           C +G RL GPE++  GD  + +  T FC
Sbjct: 632 CHQGFRLIGPESLMCGDRGEWQPATPFC 659


>U51998-6|ABS83845.1|  825|Caenorhabditis elegans Hypothetical
           protein C12D12.1c protein.
          Length = 825

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 16/42 (38%), Positives = 21/42 (50%)
 Frame = +3

Query: 84  TNTPSVSCQTMPSSVTEVPGSQGPRQSGSVIVPTDVPTHTSA 209
           TNT S    T+  S+     +  P+ S S   PT  PTHT+A
Sbjct: 518 TNTISPHLSTITGSIVTSTPTMAPQTSAS---PTTTPTHTTA 556


>U80031-5|AAB37615.1|  547|Caenorhabditis elegans Hypothetical
           protein B0554.2 protein.
          Length = 547

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 15/57 (26%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
 Frame = +3

Query: 75  TFTTNTPSVSCQTMPSSVT--EVPGSQGPRQSGSVIVPTDVPTHTSAVSLGSVFXFL 239
           T TT+T  +SC  +   +T  +V    GP ++  V  P  V  +    S+ S++ ++
Sbjct: 227 TDTTSTMKISCSAIAGYITNMDVNNGLGPAENDVVPPPQTVAINAECSSVDSIWNYV 283


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,723,204
Number of Sequences: 27780
Number of extensions: 256576
Number of successful extensions: 965
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 706
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 942
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1708383636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)