Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP17_T7_L22
         (905 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    29   1.2  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    23   7.4  

>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 14/38 (36%), Positives = 17/38 (44%)
 Frame = -3

Query: 591 PPXAPPPPPXXXGPXXXLXKXXXGXPPPXRPXFFXKKK 478
           PP  PPPPP   G      +     PPP  P +  K+K
Sbjct: 5   PPGNPPPPPPPPG-----FEPPSQPPPPPPPGYVKKRK 37



 Score = 28.3 bits (60), Expect = 1.6
 Identities = 14/38 (36%), Positives = 17/38 (44%)
 Frame = -2

Query: 589 PXGPPXPPPGXGXXXXXX*KXXGXPPPXXPXFFXKKKK 476
           P  PP PPP  G       +    PPP  P  + KK+K
Sbjct: 6   PGNPPPPPPPPGF------EPPSQPPPPPPPGYVKKRK 37


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 23.0 bits (47), Expect(2) = 7.4
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = -3

Query: 591 PPXAPPPPP 565
           PP  PPPPP
Sbjct: 189 PPPPPPPPP 197



 Score = 21.0 bits (42), Expect(2) = 7.4
 Identities = 7/13 (53%), Positives = 7/13 (53%)
 Frame = -3

Query: 588 PXAPPPPPXXXGP 550
           P  PPPPP    P
Sbjct: 236 PAPPPPPPPTLPP 248


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,419,607
Number of Sequences: 5004
Number of extensions: 16848
Number of successful extensions: 53
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 43
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 458501510
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)