Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP17_T7_L21
         (644 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    36   0.005
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    33   0.027
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    33   0.047
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    31   0.14 
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch...    29   0.43 
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    29   0.57 
SPAC26A3.08 |smb1|smb|Sm snRNP core protein Smb1|Schizosaccharom...    28   1.3  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    26   4.0  
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S...    26   5.3  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 35.9 bits (79), Expect = 0.005
 Identities = 18/34 (52%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
 Frame = +2

Query: 482 GGPPPPXXXGG--GGGXPPPPXXGXPPPPXKXRG 577
           GGPPPP    G  G G PPPP    PPPP    G
Sbjct: 759 GGPPPPPPPPGVAGAGPPPPP----PPPPAVSAG 788



 Score = 35.1 bits (77), Expect = 0.009
 Identities = 18/36 (50%), Positives = 18/36 (50%)
 Frame = +1

Query: 490 PPPXXXGGGGGXPPPPXXXXXPPPXXXKGXXPPPPP 597
           PPP    GG   PPPP     PPP    G  PPPPP
Sbjct: 752 PPPAPIMGG---PPPP-----PPPPGVAGAGPPPPP 779



 Score = 32.7 bits (71), Expect = 0.047
 Identities = 18/39 (46%), Positives = 18/39 (46%), Gaps = 3/39 (7%)
 Frame = +2

Query: 488 PPPPXXXGGGGGXPPPP---XXGXPPPPXKXRGXXPPPP 595
           PPP    GG    PPPP     G PPPP       PPPP
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAGAGPPPPP-------PPPP 783



 Score = 31.5 bits (68), Expect = 0.11
 Identities = 12/22 (54%), Positives = 12/22 (54%)
 Frame = -3

Query: 546 PXXGGGGXPPPPPXXXGGGGPP 481
           P  GG   PPPPP   G G PP
Sbjct: 756 PIMGGPPPPPPPPGVAGAGPPP 777



 Score = 31.1 bits (67), Expect = 0.14
 Identities = 16/36 (44%), Positives = 16/36 (44%)
 Frame = +2

Query: 488 PPPPXXXGGGGGXPPPPXXGXPPPPXKXRGXXPPPP 595
           P PP     GG  PPP     PPP     G  PPPP
Sbjct: 750 PVPPPAPIMGGPPPPP-----PPPGVAGAGPPPPPP 780



 Score = 29.9 bits (64), Expect = 0.33
 Identities = 11/23 (47%), Positives = 11/23 (47%)
 Frame = +1

Query: 529 PPPXXXXXPPPXXXKGXXPPPPP 597
           P P     PPP    G  PPPPP
Sbjct: 744 PAPAPIPVPPPAPIMGGPPPPPP 766



 Score = 29.9 bits (64), Expect = 0.33
 Identities = 11/19 (57%), Positives = 11/19 (57%)
 Frame = -1

Query: 536 GGGGXPPPPPXXXGGGAPP 480
           GG   PPPPP   G G PP
Sbjct: 759 GGPPPPPPPPGVAGAGPPP 777



 Score = 28.3 bits (60), Expect = 1.0
 Identities = 13/37 (35%), Positives = 14/37 (37%)
 Frame = +1

Query: 487 APPPXXXGGGGGXPPPPXXXXXPPPXXXKGXXPPPPP 597
           +PPP         P P      PP     G  PPPPP
Sbjct: 731 SPPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPP 767



 Score = 26.6 bits (56), Expect = 3.1
 Identities = 12/43 (27%), Positives = 15/43 (34%)
 Frame = -2

Query: 538 GGGGGXPPPPXXXXGGGPPXXXKHPFXXTPXKKIFPPGXKXXP 410
           GG    PPPP     G PP     P       + + P  +  P
Sbjct: 759 GGPPPPPPPPGVAGAGPPPPPPPPPAVSAGGSRYYAPAPQAEP 801


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 33.5 bits (73), Expect = 0.027
 Identities = 27/83 (32%), Positives = 30/83 (36%), Gaps = 2/83 (2%)
 Frame = -3

Query: 561 GGGGXPXXGGGGXPPPPPXXXGGGGPPXXKNTXFXXPPXKKFFPXGXKXXPXGXXLXGPP 382
           GGG     GG G PPP P   GG G    +             P G +  P G    G P
Sbjct: 187 GGGFGGFGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGG--FGGGP 244

Query: 381 LXXXXGVXFXGG--GFFXXGPXG 319
                G+   GG  G F  GP G
Sbjct: 245 GGFGGGLGGFGGGPGGFGGGPGG 267


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 32.7 bits (71), Expect = 0.047
 Identities = 16/40 (40%), Positives = 16/40 (40%), Gaps = 5/40 (12%)
 Frame = +2

Query: 488 PPPPXXXGGGGGXPPPPXXGXPPPPXKXR-----GXXPPP 592
           PPPP      G  P PP     PPP   R     G  PPP
Sbjct: 339 PPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPP 378



 Score = 28.3 bits (60), Expect = 1.0
 Identities = 15/43 (34%), Positives = 16/43 (37%), Gaps = 6/43 (13%)
 Frame = +2

Query: 485 GPPPPXXXGGGGGXPPPPXX------GXPPPPXKXRGXXPPPP 595
           G PP          PPPP        G  P P + R   PPPP
Sbjct: 323 GKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPP 365



 Score = 27.5 bits (58), Expect = 1.8
 Identities = 13/37 (35%), Positives = 13/37 (35%)
 Frame = +1

Query: 487 APPPXXXGGGGGXPPPPXXXXXPPPXXXKGXXPPPPP 597
           APP    G     P PP     PP        PP PP
Sbjct: 435 APPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPP 471


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 31.1 bits (67), Expect = 0.14
 Identities = 15/34 (44%), Positives = 16/34 (47%)
 Frame = +2

Query: 515 GGGXPPPPXXGXPPPPXKXRGXXPPPPXXXKKXK 616
           G   PPPP  G  PP    +   PPPP   KK K
Sbjct: 7   GNPPPPPPPPGFEPP---SQPPPPPPPGYVKKRK 37



 Score = 29.5 bits (63), Expect = 0.43
 Identities = 13/26 (50%), Positives = 13/26 (50%)
 Frame = +1

Query: 520 GXPPPPXXXXXPPPXXXKGXXPPPPP 597
           G PPPP     PPP       PPPPP
Sbjct: 7   GNPPPPP----PPPGFEPPSQPPPPP 28


>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
           Y|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1002

 Score = 29.5 bits (63), Expect = 0.43
 Identities = 17/42 (40%), Positives = 17/42 (40%), Gaps = 6/42 (14%)
 Frame = +2

Query: 488 PPPPXXXGGGGGXPPPPXXGXP----PPPXKXR--GXXPPPP 595
           PPPP     G   PPPP    P    PPP      G   PPP
Sbjct: 208 PPPPMHHKPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPP 249



 Score = 29.5 bits (63), Expect = 0.43
 Identities = 17/42 (40%), Positives = 17/42 (40%), Gaps = 6/42 (14%)
 Frame = +2

Query: 488 PPPPXXXGGGGGXPPPPXXGXP----PPPXKXR--GXXPPPP 595
           PPPP     G   PPPP    P    PPP      G   PPP
Sbjct: 234 PPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPP 275



 Score = 29.5 bits (63), Expect = 0.43
 Identities = 17/42 (40%), Positives = 17/42 (40%), Gaps = 6/42 (14%)
 Frame = +2

Query: 488 PPPPXXXGGGGGXPPPPXXGXP----PPPXKXR--GXXPPPP 595
           PPPP     G   PPPP    P    PPP      G   PPP
Sbjct: 260 PPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPP 301



 Score = 29.5 bits (63), Expect = 0.43
 Identities = 17/42 (40%), Positives = 17/42 (40%), Gaps = 6/42 (14%)
 Frame = +2

Query: 488 PPPPXXXGGGGGXPPPPXXGXP----PPPXKXR--GXXPPPP 595
           PPPP     G   PPPP    P    PPP      G   PPP
Sbjct: 286 PPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPP 327



 Score = 27.5 bits (58), Expect = 1.8
 Identities = 14/32 (43%), Positives = 14/32 (43%), Gaps = 5/32 (15%)
 Frame = +2

Query: 488 PPPPXXXGGGGGXPPPP-----XXGXPPPPXK 568
           PPPP     G   PPPP         PPPP K
Sbjct: 312 PPPPMHHEPGEHMPPPPMHHEPGEHMPPPPFK 343


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 29.1 bits (62), Expect = 0.57
 Identities = 13/35 (37%), Positives = 13/35 (37%)
 Frame = +1

Query: 493  PPXXXGGGGGXPPPPXXXXXPPPXXXKGXXPPPPP 597
            PP      G  P PP     P P    G  P PPP
Sbjct: 1179 PPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPP 1213



 Score = 28.3 bits (60), Expect = 1.0
 Identities = 13/37 (35%), Positives = 13/37 (35%)
 Frame = +2

Query: 485  GPPPPXXXGGGGGXPPPPXXGXPPPPXKXRGXXPPPP 595
            G PP           P P  G PP P    G  P PP
Sbjct: 1157 GAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPP 1193



 Score = 27.5 bits (58), Expect = 1.8
 Identities = 15/38 (39%), Positives = 15/38 (39%)
 Frame = +2

Query: 482  GGPPPPXXXGGGGGXPPPPXXGXPPPPXKXRGXXPPPP 595
            G PP P      G  P PP    PP P    G  P PP
Sbjct: 1177 GIPPVPKP--AAGVPPVPPPSEAPPVPKPSVGVPPVPP 1212



 Score = 25.4 bits (53), Expect = 7.1
 Identities = 12/33 (36%), Positives = 12/33 (36%)
 Frame = +2

Query: 494  PPXXXGGGGGXPPPPXXGXPPPPXKXRGXXPPP 592
            PP      G  P PP    PP P    G  P P
Sbjct: 1198 PPVPKPSVGVPPVPPPSTAPPVPTPSAGLPPVP 1230



 Score = 25.0 bits (52), Expect = 9.3
 Identities = 12/37 (32%), Positives = 12/37 (32%)
 Frame = +1

Query: 487  APPPXXXGGGGGXPPPPXXXXXPPPXXXKGXXPPPPP 597
            A PP     G    P P     P P    G  P P P
Sbjct: 1148 AAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKP 1184


>SPAC26A3.08 |smb1|smb|Sm snRNP core protein
           Smb1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 147

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 12/26 (46%), Positives = 12/26 (46%)
 Frame = -3

Query: 558 GGGXPXXGGGGXPPPPPXXXGGGGPP 481
           G   P  G G   PPPP   G G PP
Sbjct: 116 GLAGPVRGVGYTAPPPPAGFGRGAPP 141



 Score = 27.1 bits (57), Expect = 2.3
 Identities = 11/19 (57%), Positives = 11/19 (57%)
 Frame = -1

Query: 536 GGGGXPPPPPXXXGGGAPP 480
           G G   PPPP   G GAPP
Sbjct: 123 GVGYTAPPPPAGFGRGAPP 141


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 10/22 (45%), Positives = 10/22 (45%)
 Frame = +2

Query: 527  PPPPXXGXPPPPXKXRGXXPPP 592
            PPPP    PPPP        PP
Sbjct: 1707 PPPPPMSVPPPPSAPPMPAGPP 1728



 Score = 25.0 bits (52), Expect = 9.3
 Identities = 14/35 (40%), Positives = 14/35 (40%)
 Frame = +2

Query: 488  PPPPXXXGGGGGXPPPPXXGXPPPPXKXRGXXPPP 592
            PPPP         PPPP    PP P       PPP
Sbjct: 1707 PPPPPM-----SVPPPP--SAPPMPAGPPSAPPPP 1734


>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
           Cap1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 551

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 11/23 (47%), Positives = 11/23 (47%)
 Frame = +2

Query: 494 PPXXXGGGGGXPPPPXXGXPPPP 562
           P       GG PPPP    PPPP
Sbjct: 295 PSSGDSANGGLPPPP---PPPPP 314


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,986,490
Number of Sequences: 5004
Number of extensions: 37403
Number of successful extensions: 313
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)