Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP17_T7_L20
         (797 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_1174 - 26696869-26698191                                         29   5.7  
03_03_0208 + 15459260-15459922                                         28   9.9  
01_05_0117 - 18300157-18301106,18301149-18301543,18302592-183026...    28   9.9  

>12_02_1174 - 26696869-26698191
          Length = 440

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 16/56 (28%), Positives = 18/56 (32%), Gaps = 1/56 (1%)
 Frame = +3

Query: 342 PXXXARXTSAPXXRXXPXRX-PXPXFPPXXXXXXPXSXSRXXXXAXPLXXPXPGPP 506
           P    R    P  R  P +  P P  PP      P    R      P+  P P PP
Sbjct: 127 PPPRTRTRVEPPHRPPPVKPQPPPSLPPPPPPPPPPPPPRPPSVKPPVVQPKPQPP 182


>03_03_0208 + 15459260-15459922
          Length = 220

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 19/63 (30%), Positives = 25/63 (39%), Gaps = 5/63 (7%)
 Frame = +3

Query: 246 ALCSHDHSGSGVRSQVLERLEMRLRSGGGGA-----RPXXXARXTSAPXXRXXPXRXPXP 410
           ALC  D +    + +V+ R      + GGGA      P    R +SAP     P   P P
Sbjct: 131 ALCRLDATAEHKQDEVVARPAAAAGADGGGAGEDRGHPPPRERLSSAPCREASPLLEPTP 190

Query: 411 XFP 419
             P
Sbjct: 191 TAP 193


>01_05_0117 - 18300157-18301106,18301149-18301543,18302592-18302681,
            18303723-18303836,18303903-18304046,18316147-18316312,
            18316396-18317130,18317219-18317422,18317496-18318177,
            18318272-18318528,18318604-18319298,18319345-18319382,
            18319847-18319928,18320018-18320112,18320443-18320526,
            18320601-18320891,18321521-18321853,18321948-18322150,
            18322243-18322399,18322482-18322585,18322675-18322835,
            18323511-18323824,18324317-18324589,18324666-18324967,
            18325459-18325549,18326140-18326190,18326700-18326768,
            18326926-18327017,18327082-18327148,18328582-18328746,
            18329027-18329103,18329572-18329766,18330208-18330275,
            18331081-18331172,18331399-18331522,18331608-18331705,
            18332384-18332997,18333620-18333626
          Length = 2892

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +3

Query: 240  HHALCSHDHSGSGVRSQVLERLEMRLRSGGGGAR 341
            H A C+ D  G GVR + +     RLR+G  G+R
Sbjct: 1373 HEAHCAQDRRGDGVRPRQIR----RLRAGEAGSR 1402


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,662,916
Number of Sequences: 37544
Number of extensions: 170437
Number of successful extensions: 527
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 509
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 527
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2162420256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)