Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP17_T7_L19
(725 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z37983-1|CAA86061.1| 276|Caenorhabditis elegans Hypothetical pr... 107 1e-23
AF039043-7|AAY86190.1| 103|Caenorhabditis elegans Hypothetical ... 29 2.6
AL032621-5|CAA21492.2| 404|Caenorhabditis elegans Hypothetical ... 28 5.9
Z70685-1|CAA94607.1| 522|Caenorhabditis elegans Hypothetical pr... 28 7.8
Z19122-1|CAA79529.1| 522|Caenorhabditis elegans hypothetical po... 28 7.8
U55373-1|AAC25894.1| 1829|Caenorhabditis elegans Lethal protein ... 28 7.8
U39742-3|AAY86225.1| 188|Caenorhabditis elegans Hypothetical pr... 28 7.8
AL033510-7|CAA22069.1| 124|Caenorhabditis elegans Hypothetical ... 28 7.8
AF308445-1|AAG29838.1| 1829|Caenorhabditis elegans LET-418 protein. 28 7.8
>Z37983-1|CAA86061.1| 276|Caenorhabditis elegans Hypothetical
protein B0393.1 protein.
Length = 276
Score = 107 bits (256), Expect = 1e-23
Identities = 47/89 (52%), Positives = 64/89 (71%), Gaps = 5/89 (5%)
Frame = -1
Query: 575 ITEASYVNIPVIALCNTDSPXRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLPRDQ 396
+TEASYV +PVI+ NT+SP + +DI +PCN K SIGLMWW+LARE+L LRG + R
Sbjct: 134 VTEASYVGVPVISFVNTESPLKLIDIGVPCNNKGERSIGLMWWMLAREILILRGKISRQT 193
Query: 395 RW-----DVVVDLFFYRDPEESEKDEQQA 324
+ +++ DL+FYRDP E+EK+E A
Sbjct: 194 GFVLEGKEIMPDLYFYRDPTETEKEETGA 222
Score = 31.1 bits (67), Expect = 0.84
Identities = 14/30 (46%), Positives = 15/30 (50%)
Frame = -2
Query: 709 FXGHTGXTPXXGRFTXGXFXNQIXXAFP*P 620
F HTG T GRF+ G NQI F P
Sbjct: 90 FAAHTGATAIFGRFSPGCLTNQIQKTFKEP 119
>AF039043-7|AAY86190.1| 103|Caenorhabditis elegans Hypothetical
protein F39C12.4 protein.
Length = 103
Score = 29.5 bits (63), Expect = 2.6
Identities = 12/21 (57%), Positives = 12/21 (57%)
Frame = -3
Query: 213 CCTRCSSCFWSTPCSRRMVCP 151
CCT CF ST CS VCP
Sbjct: 53 CCTN-EECFMSTECSYSAVCP 72
>AL032621-5|CAA21492.2| 404|Caenorhabditis elegans Hypothetical
protein Y45F3A.8 protein.
Length = 404
Score = 28.3 bits (60), Expect = 5.9
Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 3/39 (7%)
Frame = -3
Query: 561 ICQHSCDCFVQHRLPXKICGHCYPM---QHQVFPLYWFD 454
+C+HS + K CGHC PM +HQ P + D
Sbjct: 342 LCEHSRYKTLMENYCPKACGHCIPMCRDRHQNCPQFHED 380
>Z70685-1|CAA94607.1| 522|Caenorhabditis elegans Hypothetical
protein R07D5.1 protein.
Length = 522
Score = 27.9 bits (59), Expect = 7.8
Identities = 10/41 (24%), Positives = 21/41 (51%)
Frame = +3
Query: 243 HWLQCFIPVFMDRSNYFWFSWYHSLSLGLLFILFTFFRVTV 365
H +QC + + M F F W+ L+ G++ + T + + +
Sbjct: 390 HTVQCVLMINMFNEKIFLFLWFWFLTCGIVTVCNTMYWILI 430
>Z19122-1|CAA79529.1| 522|Caenorhabditis elegans hypothetical
polypeptide protein.
Length = 522
Score = 27.9 bits (59), Expect = 7.8
Identities = 10/41 (24%), Positives = 21/41 (51%)
Frame = +3
Query: 243 HWLQCFIPVFMDRSNYFWFSWYHSLSLGLLFILFTFFRVTV 365
H +QC + + M F F W+ L+ G++ + T + + +
Sbjct: 390 HTVQCVLMINMFNEKIFLFLWFWFLTCGIVTVCNTMYWILI 430
>U55373-1|AAC25894.1| 1829|Caenorhabditis elegans Lethal protein 418
protein.
Length = 1829
Score = 27.9 bits (59), Expect = 7.8
Identities = 14/34 (41%), Positives = 23/34 (67%), Gaps = 2/34 (5%)
Frame = +2
Query: 164 LLEQGVLQKQELQRVQQAGRYLQP--MKPLAPVF 259
L+EQ ++ +++L+R A R+LQP + PLA F
Sbjct: 1591 LIEQSLVIEEQLRRAAHANRHLQPDNVGPLAQRF 1624
>U39742-3|AAY86225.1| 188|Caenorhabditis elegans Hypothetical
protein C25F6.8 protein.
Length = 188
Score = 27.9 bits (59), Expect = 7.8
Identities = 12/36 (33%), Positives = 21/36 (58%)
Frame = -1
Query: 533 CNTDSPXRFVDIAIPCNTKSSHSIGLMWWLLAREVL 426
CNTD+ R + CNT + +G+ + L+AR ++
Sbjct: 49 CNTDAEFRLIQCCSSCNT---NGVGIAYDLVARSLV 81
>AL033510-7|CAA22069.1| 124|Caenorhabditis elegans Hypothetical
protein Y40H7A.11 protein.
Length = 124
Score = 27.9 bits (59), Expect = 7.8
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = -1
Query: 482 TKSSHSIGLMWWLLA 438
T+ H IG+MWWL A
Sbjct: 72 TRVEHKIGIMWWLCA 86
>AF308445-1|AAG29838.1| 1829|Caenorhabditis elegans LET-418 protein.
Length = 1829
Score = 27.9 bits (59), Expect = 7.8
Identities = 14/34 (41%), Positives = 23/34 (67%), Gaps = 2/34 (5%)
Frame = +2
Query: 164 LLEQGVLQKQELQRVQQAGRYLQP--MKPLAPVF 259
L+EQ ++ +++L+R A R+LQP + PLA F
Sbjct: 1591 LIEQSLVIEEQLRRAAHANRHLQPDNVGPLAQRF 1624
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,208,388
Number of Sequences: 27780
Number of extensions: 273887
Number of successful extensions: 820
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 793
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 819
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1708383636
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -