Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP17_T7_L18
         (1053 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X67337-1|CAA47752.1|  551|Homo sapiens Human pre-mRNA cleavage f...    33   1.7  
X67336-1|CAA47751.1|  551|Homo sapiens HPBRII-7 protein.               33   1.7  
AK223568-1|BAD97288.1|  551|Homo sapiens cleavage and polyadenyl...    33   1.7  
BC000714-1|AAH00714.1|  588|Homo sapiens CPSF6 protein protein.        33   2.3  
L49380-1|AAB04033.1|  639|Homo sapiens transcription factor ZFM1...    31   7.0  

>X67337-1|CAA47752.1|  551|Homo sapiens Human pre-mRNA cleavage
           factor I 68 kDa subunit protein.
          Length = 551

 Score = 33.1 bits (72), Expect = 1.7
 Identities = 31/129 (24%), Positives = 33/129 (25%), Gaps = 2/129 (1%)
 Frame = +2

Query: 56  PXSXAXRXPSXPLAPXTPXXXAXPAP--RXLXXPXXPKXXGXXKPGXPXFTXGAPXWGXP 229
           P       P  PL P  P     P P  + L  P         +P  P    G P    P
Sbjct: 229 PFPAGQTPPRPPLGPPGPPGPPGPPPPGQVLPPPLAGPPNRGDRPPPPVLFPGQPFGQPP 288

Query: 230 XVXAGEXXXXPXPPRGPXXXPXXXXXRSLXAXGAAXHXXPXRPPXAXXPPXXXADRXTXP 409
                     P P  GP   P           G      P RPP    PP   A     P
Sbjct: 289 LGPLPPGPPPPVPGYGPPPGPPPPQQGPPPPPGP----FPPRPPGPLGPPLTLAPPPHLP 344

Query: 410 QXSXAXPXP 436
                 P P
Sbjct: 345 GPPPGAPPP 353



 Score = 30.7 bits (66), Expect = 9.3
 Identities = 25/106 (23%), Positives = 27/106 (25%)
 Frame = +1

Query: 697  PRRAPXGSPXPMAXXXXSXLXXPXXXPXAXXPPXAXPXXXXXXPLTAHPPXVXXXPTXAX 876
            P  A  G P P      +    P   P    PP   P      P  A PP     P    
Sbjct: 218  PGPAGPGGPPPPFPAGQTPPRPPLGPPGPPGPPGPPPPGQVLPPPLAGPPNRGDRP-PPP 276

Query: 877  XLXXAXPXXXXXXAPPPXXVMXXXXXXSPPXXXXPXRXSPPXRXXP 1014
             L    P       P P           PP    P +  PP    P
Sbjct: 277  VLFPGQPFGQPPLGPLPPGPPPPVPGYGPPPGPPPPQQGPPPPPGP 322


>X67336-1|CAA47751.1|  551|Homo sapiens HPBRII-7 protein.
          Length = 551

 Score = 33.1 bits (72), Expect = 1.7
 Identities = 31/129 (24%), Positives = 33/129 (25%), Gaps = 2/129 (1%)
 Frame = +2

Query: 56  PXSXAXRXPSXPLAPXTPXXXAXPAP--RXLXXPXXPKXXGXXKPGXPXFTXGAPXWGXP 229
           P       P  PL P  P     P P  + L  P         +P  P    G P    P
Sbjct: 229 PFPAGQTPPRPPLGPPGPPGPPGPPPPGQVLPPPLAGPPNRGDRPPPPVLFPGQPFGQPP 288

Query: 230 XVXAGEXXXXPXPPRGPXXXPXXXXXRSLXAXGAAXHXXPXRPPXAXXPPXXXADRXTXP 409
                     P P  GP   P           G      P RPP    PP   A     P
Sbjct: 289 LGPLPPGPPPPVPGYGPPPGPPPPQQGPPPPPGP----FPPRPPGPLGPPLTLAPPPHLP 344

Query: 410 QXSXAXPXP 436
                 P P
Sbjct: 345 GPPPGAPPP 353



 Score = 30.7 bits (66), Expect = 9.3
 Identities = 25/106 (23%), Positives = 27/106 (25%)
 Frame = +1

Query: 697  PRRAPXGSPXPMAXXXXSXLXXPXXXPXAXXPPXAXPXXXXXXPLTAHPPXVXXXPTXAX 876
            P  A  G P P      +    P   P    PP   P      P  A PP     P    
Sbjct: 218  PGPAGPGGPPPPFPAGQTPPRPPLGPPGPPGPPGPPPPGQVLPPPLAGPPNRGDRP-PPP 276

Query: 877  XLXXAXPXXXXXXAPPPXXVMXXXXXXSPPXXXXPXRXSPPXRXXP 1014
             L    P       P P           PP    P +  PP    P
Sbjct: 277  VLFPGQPFGQPPLGPLPPGPPPPVPGYGPPPGPPPPQQGPPPPPGP 322


>AK223568-1|BAD97288.1|  551|Homo sapiens cleavage and
           polyadenylation specific factor 6, 68 kD subunit variant
           protein.
          Length = 551

 Score = 33.1 bits (72), Expect = 1.7
 Identities = 31/129 (24%), Positives = 33/129 (25%), Gaps = 2/129 (1%)
 Frame = +2

Query: 56  PXSXAXRXPSXPLAPXTPXXXAXPAP--RXLXXPXXPKXXGXXKPGXPXFTXGAPXWGXP 229
           P       P  PL P  P     P P  + L  P         +P  P    G P    P
Sbjct: 229 PFPAGQTPPRPPLGPPGPPGPPGPPPPGQVLPPPLAGPPNRGDRPPPPVLFPGQPFGQPP 288

Query: 230 XVXAGEXXXXPXPPRGPXXXPXXXXXRSLXAXGAAXHXXPXRPPXAXXPPXXXADRXTXP 409
                     P P  GP   P           G      P RPP    PP   A     P
Sbjct: 289 LGPLPPGPPPPVPGYGPPPGPPPPQQGPPPPPGP----FPPRPPGPLGPPLTLAPPPHLP 344

Query: 410 QXSXAXPXP 436
                 P P
Sbjct: 345 GPPPGAPPP 353



 Score = 30.7 bits (66), Expect = 9.3
 Identities = 25/106 (23%), Positives = 27/106 (25%)
 Frame = +1

Query: 697  PRRAPXGSPXPMAXXXXSXLXXPXXXPXAXXPPXAXPXXXXXXPLTAHPPXVXXXPTXAX 876
            P  A  G P P      +    P   P    PP   P      P  A PP     P    
Sbjct: 218  PGPAGPGGPPPPFPAGQTPPRPPLGPPGPPGPPGPPPPGQVLPPPLAGPPNRGDRP-PPP 276

Query: 877  XLXXAXPXXXXXXAPPPXXVMXXXXXXSPPXXXXPXRXSPPXRXXP 1014
             L    P       P P           PP    P +  PP    P
Sbjct: 277  VLFPGQPFGQPPLGPLPPGPPPPVPGYGPPPGPPPPQQGPPPPPGP 322


>BC000714-1|AAH00714.1|  588|Homo sapiens CPSF6 protein protein.
          Length = 588

 Score = 32.7 bits (71), Expect = 2.3
 Identities = 30/121 (24%), Positives = 32/121 (26%), Gaps = 2/121 (1%)
 Frame = +2

Query: 80  PSXPLAPXTPXXXAXPAP--RXLXXPXXPKXXGXXKPGXPXFTXGAPXWGXPXVXAGEXX 253
           P  PL P  P     P P  + L  P         +P  P    G P    P        
Sbjct: 274 PRPPLGPPGPPGPPGPPPPGQVLPPPLAGPPNRGDRPPPPVLFPGQPFGQPPLGPLPPGP 333

Query: 254 XXPXPPRGPXXXPXXXXXRSLXAXGAAXHXXPXRPPXAXXPPXXXADRXTXPQXSXAXPX 433
             P P  GP   P           G      P RPP    PP   A     P      P 
Sbjct: 334 PPPVPGYGPPPGPPPPQQGPPPPPGP----FPPRPPGPLGPPLTLAPPPHLPGPPPGAPP 389

Query: 434 P 436
           P
Sbjct: 390 P 390


>L49380-1|AAB04033.1|  639|Homo sapiens transcription factor ZFM1
           protein.
          Length = 639

 Score = 31.1 bits (67), Expect = 7.0
 Identities = 30/127 (23%), Positives = 33/127 (25%), Gaps = 2/127 (1%)
 Frame = +1

Query: 46  PPXTPKXGXXXPLXPPRPXYPXXXRXSCPPRPXXXGRX*GXRSTKTWRSXIYPWGPXLGV 225
           PP  P      P  P  P  P   +   PP P          +   W+          G 
Sbjct: 479 PPPPPPPSGQPPPPPSGPLPPWQQQQQQPPPPPPPSSSMASSTPLPWQQNTTTTTTSAGT 538

Query: 226 XXRTSGXXMXXXAXAS-GAXXXXSRPRXA-LPXGHXGXXSPXAXXPPXSVXPTXXXSXSA 399
                       A AS GA      P    LP G      P A  PP    P       A
Sbjct: 539 GSIPPWQQQQAAAAASPGAPQMQGNPTMVPLPPGVQPPLPPGAPPPPPPPPPVSAGMMYA 598

Query: 400 XPXPTKP 420
            P P  P
Sbjct: 599 PPPPPPP 605


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.315    0.137    0.471 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 72,483,953
Number of Sequences: 237096
Number of extensions: 1310851
Number of successful extensions: 5445
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2429
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5154
length of database: 76,859,062
effective HSP length: 91
effective length of database: 55,283,326
effective search space used: 14318381434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)