Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP17_T7_L15
         (953 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       25   0.76 
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    24   2.3  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    23   4.1  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    22   9.4  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 25.4 bits (53), Expect = 0.76
 Identities = 16/49 (32%), Positives = 17/49 (34%), Gaps = 3/49 (6%)
 Frame = +1

Query: 733 PXPPPAPXPXXP---PXPXPPXXPXPXXPRXPXXPPPXXPXPPXXXPAA 870
           P P P   P  P     P P   P P  P  P  PP   P      PA+
Sbjct: 23  PQPSPHQSPQAPQRGSPPNPSQGPPPGGP--PGAPPSQNPSQMMISPAS 69



 Score = 24.6 bits (51), Expect = 1.3
 Identities = 11/34 (32%), Positives = 12/34 (35%)
 Frame = +1

Query: 769 PXPXPPXXPXPXXPRXPXXPPPXXPXPPXXXPAA 870
           P P P     P  P+    P P    PP   P A
Sbjct: 21  PGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGA 54



 Score = 24.2 bits (50), Expect = 1.8
 Identities = 13/42 (30%), Positives = 14/42 (33%), Gaps = 2/42 (4%)
 Frame = +1

Query: 748 APXPXXPPXPXPPXXPXPXXPRXPXXPPPXXP--XPPXXXPA 867
           AP P   P   P        P     PPP  P   PP   P+
Sbjct: 20  APGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPPSQNPS 61



 Score = 23.8 bits (49), Expect = 2.3
 Identities = 10/30 (33%), Positives = 11/30 (36%)
 Frame = +2

Query: 788 PRXXPTXPXXPPXPPPXXPPRPXPXPXPXG 877
           P   P+    P  P    PP P   P P G
Sbjct: 21  PGPQPSPHQSPQAPQRGSPPNPSQGPPPGG 50



 Score = 23.8 bits (49), Expect = 2.3
 Identities = 9/26 (34%), Positives = 11/26 (42%)
 Frame = +3

Query: 705 PPXPXXXXXPXPAPXPPPXXXPPSXP 782
           P  P     P P+  PPP   P + P
Sbjct: 31  PQAPQRGSPPNPSQGPPPGGPPGAPP 56


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 23.8 bits (49), Expect = 2.3
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = -3

Query: 555  PPPPPPP 535
            PPPPPPP
Sbjct: 1355 PPPPPPP 1361



 Score = 23.8 bits (49), Expect = 2.3
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = -3

Query: 555  PPPPPPP 535
            PPPPPPP
Sbjct: 1356 PPPPPPP 1362


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 23.0 bits (47), Expect = 4.1
 Identities = 9/21 (42%), Positives = 9/21 (42%)
 Frame = +2

Query: 827 PPPXXPPRPXPXPXPXGXXIP 889
           PP   P  P P P P    IP
Sbjct: 437 PPSSNPVSPVPSPDPLDLAIP 457


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 21.8 bits (44), Expect = 9.4
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +3

Query: 732 PXPAPXPPP 758
           P PAP PPP
Sbjct: 339 PKPAPPPPP 347


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 160,531
Number of Sequences: 438
Number of extensions: 7310
Number of successful extensions: 28
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 31323201
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)