Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP17_T7_L14
(808 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1 |S... 29 0.59
SPCC663.11 |||ww domain binding protein 11 |Schizosaccharomyces ... 29 0.78
SPCC1281.02c |spf30||splicing factor Spf30 |Schizosaccharomyces ... 29 1.0
SPAC22A12.08c |||cardiolipin synthase/ hydrolase fusion protein ... 28 1.4
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ... 28 1.8
SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6 |Schizosacc... 27 3.1
SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein T... 27 3.1
SPAC3A11.02 |cps3|mug188|zinc finger protein Cps3|Schizosaccharo... 26 5.5
SPAC1250.03 |ubc14||ubiquitin conjugating enzyme Ubc14|Schizosac... 26 5.5
SPBC8D2.02c |||vacuolar sorting protein Vps68|Schizosaccharomyce... 26 5.5
SPCC4B3.03c |||DUF21 domain protein|Schizosaccharomyces pombe|ch... 26 7.2
SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces pomb... 26 7.2
SPAC13G7.10 |mug152||transcription factor |Schizosaccharomyces p... 26 7.2
SPAC11D3.04c |||SnoaL|Schizosaccharomyces pombe|chr 1|||Manual 26 7.2
SPAC57A7.07c |||homocysteine methyltransferase |Schizosaccharomy... 25 9.6
SPAC29E6.07 ||SPAC30.11|sequence orphan|Schizosaccharomyces pomb... 25 9.6
>SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 891
Score = 29.5 bits (63), Expect = 0.59
Identities = 28/115 (24%), Positives = 46/115 (40%), Gaps = 6/115 (5%)
Frame = -3
Query: 698 PRQHLPXXGNQPDHQSRSXHHHPRLTPF---HQSLTPNRRSS---RRVKPPLSSEAPSAY 537
P +P QP +R+ P + + +S +R +S R+ P S +PS
Sbjct: 529 PVSSVPSSPVQPTSYNRTLPPMPEVVAYKGDEESPRVSRNTSLARRKPLPDTESHSPSPS 588
Query: 536 LTPSSLGMXKGVSPPYFQVNDESQASRLISRHSTHTPLPSSNSPPHRRCRHGHKP 372
T S + + ++++S S PL +S SPP R + HKP
Sbjct: 589 ATSSIKKNPSSIFRRFSSRRKQNKSST--STLQISAPLETSQSPPTPRTKPSHKP 641
>SPCC663.11 |||ww domain binding protein 11 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 278
Score = 29.1 bits (62), Expect = 0.78
Identities = 21/104 (20%), Positives = 35/104 (33%), Gaps = 5/104 (4%)
Frame = -3
Query: 656 QSRSXHHHPRLTPFHQSLTPNRRSSRRVKPPLSSEAPSAYLTPSSLGMXKGVSPPYFQVN 477
+ ++ H H R+ T + + P + P + + GV PP
Sbjct: 80 KKKNIHGH-RVGRVESDKTKEAERQHKPRKPFIPKNPKRSIYYDPIFNPYGVPPPGMPYR 138
Query: 476 DESQASRLISRHSTHTPLPSSNSP-----PHRRCRHGHKPSHHR 360
++ + S PLPS P P + KP HH+
Sbjct: 139 EKEELSSETDESVIDIPLPSEEYPFEDPKPREKKNKSFKPKHHK 182
>SPCC1281.02c |spf30||splicing factor Spf30 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 311
Score = 28.7 bits (61), Expect = 1.0
Identities = 17/67 (25%), Positives = 30/67 (44%)
Frame = -3
Query: 602 TPNRRSSRRVKPPLSSEAPSAYLTPSSLGMXKGVSPPYFQVNDESQASRLISRHSTHTPL 423
TP R ++ + S +PS Y + +S K + V+ ++ +S +P+
Sbjct: 156 TPVREPTKAISVASMSTSPSNYASRASSPDMKSSAAVTANVSPIQNVAQHVSTLPKISPI 215
Query: 422 PSSNSPP 402
P SN PP
Sbjct: 216 PPSNPPP 222
>SPAC22A12.08c |||cardiolipin synthase/ hydrolase fusion protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 570
Score = 28.3 bits (60), Expect = 1.4
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = +2
Query: 101 RNMARIYQLAVDLGGRERSLNRRREKSSFVVLKNRPDVVVQYG 229
R +A Y+ + LGG++ S+ EK F + N DV+ + G
Sbjct: 112 RALADKYKHVLVLGGKDNSVRETAEKYGFKSVINELDVIAKLG 154
>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 27.9 bits (59), Expect = 1.8
Identities = 18/46 (39%), Positives = 23/46 (50%)
Frame = -3
Query: 629 RLTPFHQSLTPNRRSSRRVKPPLSSEAPSAYLTPSSLGMXKGVSPP 492
RL H+S +P+ RS R P S +PS PS+L GV P
Sbjct: 340 RLGSLHRSRSPSPRSGR----PRRSPSPSHLSIPSTLPPADGVPKP 381
>SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 745
Score = 27.1 bits (57), Expect = 3.1
Identities = 10/32 (31%), Positives = 20/32 (62%)
Frame = -1
Query: 256 CYFSTPPFDTVLYDNIRTVLKDNKTALLSASI 161
CY P + + L ++I+T+L DN ++ A++
Sbjct: 168 CYSLDPSYKSQLEEHIKTLLSDNSPIVVPAAL 199
>SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein Trt1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 988
Score = 27.1 bits (57), Expect = 3.1
Identities = 20/78 (25%), Positives = 34/78 (43%)
Frame = -1
Query: 355 KVKIADNNLVTHKELALKVSSIIGTRVYVFDPSCYFSTPPFDTVLYDNIRTVLKDNKTAL 176
K K+ D V K + +S T+ +V + YF PF+ V+ +K + T
Sbjct: 608 KKKLKDPEFVIRKYATIHATSDRATKNFVSEAFSYFDMVPFEKVVQ---LLSMKTSDTLF 664
Query: 175 LSASIQASLPSSEIYRQL 122
+ + SSEI++ L
Sbjct: 665 VDFVDYWTKSSSEIFKML 682
>SPAC3A11.02 |cps3|mug188|zinc finger protein
Cps3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 583
Score = 26.2 bits (55), Expect = 5.5
Identities = 13/54 (24%), Positives = 23/54 (42%)
Frame = -3
Query: 563 LSSEAPSAYLTPSSLGMXKGVSPPYFQVNDESQASRLISRHSTHTPLPSSNSPP 402
+SS + S +++ S + G PY N +SR ++ H +PP
Sbjct: 460 VSSSSASRFMSKVSSNLNSGNPTPYNSYNGTPTSSRFVAFFDRHRQESEKATPP 513
>SPAC1250.03 |ubc14||ubiquitin conjugating enzyme
Ubc14|Schizosaccharomyces pombe|chr 1|||Manual
Length = 155
Score = 26.2 bits (55), Expect = 5.5
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = -1
Query: 466 KLRALLVVIPRILRSPPPTHPLIEDV 389
KLR++L I ++LR P P PL+ +
Sbjct: 105 KLRSVLEQILQLLREPNPDDPLVASI 130
>SPBC8D2.02c |||vacuolar sorting protein Vps68|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 170
Score = 26.2 bits (55), Expect = 5.5
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = -1
Query: 154 SLPSSEIYRQLVDSRHVSSDSFGVY 80
+L S I+R + S HVSS S GVY
Sbjct: 2 TLLDSSIFRFRLSSLHVSSRSLGVY 26
>SPCC4B3.03c |||DUF21 domain protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 679
Score = 25.8 bits (54), Expect = 7.2
Identities = 19/72 (26%), Positives = 31/72 (43%), Gaps = 2/72 (2%)
Frame = -3
Query: 671 NQPDHQSRSXHHHPRLTPFHQSLTPNRRSSRR--VKPPLSSEAPSAYLTPSSLGMXKGVS 498
+Q H + H P L P + +L P ++ R VK P ++ + Y + S +
Sbjct: 426 SQRSHDLAANEHAPILNPKNSALNPRLVTNDRVKVKSPSLIQSSTGYGSMSQSPSRSDLP 485
Query: 497 PPYFQVNDESQA 462
+VN E QA
Sbjct: 486 SKISRVNAELQA 497
>SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1254
Score = 25.8 bits (54), Expect = 7.2
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = +3
Query: 90 KESEETWRESTNWR*ISEEG 149
KE E W + NW+ SEEG
Sbjct: 809 KEELEAWTRAFNWQKASEEG 828
>SPAC13G7.10 |mug152||transcription factor |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 390
Score = 25.8 bits (54), Expect = 7.2
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -2
Query: 471 ITSFAPY*SSFHAYSAPLLQLTPSSKMSS 385
+ SF PY S F A P L ++PS+ +S
Sbjct: 302 LQSFHPYESLFSAGQPPSLPISPSTSQNS 330
>SPAC11D3.04c |||SnoaL|Schizosaccharomyces pombe|chr 1|||Manual
Length = 130
Score = 25.8 bits (54), Expect = 7.2
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = -1
Query: 133 YRQLVDSRHVSSDSFGVYVKS*SLILHSFGLLV 35
YRQLVD R ++ D F + K+ LH + V
Sbjct: 34 YRQLVDGRELTLDDFISHAKALRTHLHRLDINV 66
>SPAC57A7.07c |||homocysteine methyltransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 308
Score = 25.4 bits (53), Expect = 9.6
Identities = 13/27 (48%), Positives = 14/27 (51%)
Frame = -1
Query: 331 LVTHKELALKVSSIIGTRVYVFDPSCY 251
+V H E LKV II T Y D S Y
Sbjct: 37 VVKHHEEFLKVCDIISTFTYQLDASIY 63
>SPAC29E6.07 ||SPAC30.11|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 116
Score = 25.4 bits (53), Expect = 9.6
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = -3
Query: 473 ESQASRLISRHSTHTPLPSSNSPPHRRCRHGHKPS 369
E+ ASRL+ H T L + P H + H +P+
Sbjct: 77 EALASRLLKGHMTQLSLRTILPPAHTKNLHRQQPT 111
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,703,646
Number of Sequences: 5004
Number of extensions: 52926
Number of successful extensions: 177
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 177
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 392429240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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