Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP17_T7_L14
         (808 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0831 - 7688342-7688772,7690678-7692610,7693142-7693915,769...    35   0.066
01_03_0088 + 12327339-12328092,12329474-12329601,12330249-123304...    33   0.35 
08_01_0527 + 4580599-4580818,4580933-4581806,4581891-4581955,458...    32   0.47 
02_05_0897 + 32603060-32603387,32604348-32604589,32604681-326048...    29   3.3  
11_03_0178 + 11280174-11280342,11280429-11280497,11281494-112817...    29   4.4  
10_08_1037 - 22477358-22478752                                         29   4.4  
04_04_1150 + 31278367-31278885,31280065-31281278,31281759-31283355     29   4.4  
07_03_0487 - 18663890-18663964,18664286-18664441,18664693-186652...    29   5.8  
02_01_0302 - 2021221-2023305                                           28   7.6  
01_05_0014 - 17162664-17163500                                         28   7.6  

>12_01_0831 -
           7688342-7688772,7690678-7692610,7693142-7693915,
           7694019-7694142,7696084-7696189,7696346-7696532
          Length = 1184

 Score = 35.1 bits (77), Expect = 0.066
 Identities = 33/100 (33%), Positives = 45/100 (45%), Gaps = 2/100 (2%)
 Frame = -3

Query: 653 SRSXHHHPRLTPFHQSLTPNRRSSR--RVKPPLSSEAPSAYLTPSSLGMXKGVSPPYFQV 480
           SRS     RL+P  +S++  R SS   R  PP + + P+    PS+    K ++PP    
Sbjct: 147 SRSSASPIRLSPSPRSMSRTRPSSAASRSSPPFALQPPTPSWRPSTPPSAKTLTPP---- 202

Query: 479 NDESQASRLISRHSTHTPLPSSNSPPHRRCRHGHKPSHHR 360
                  R  S  ST TP   S SP  RR   G  P+ +R
Sbjct: 203 ------RRSPSPASTLTPPRRSPSPASRRMSTGSTPALNR 236


>01_03_0088 +
           12327339-12328092,12329474-12329601,12330249-12330474,
           12332638-12332765,12332880-12333033,12333408-12333841
          Length = 607

 Score = 32.7 bits (71), Expect = 0.35
 Identities = 22/55 (40%), Positives = 25/55 (45%)
 Frame = -3

Query: 503 VSPPYFQVNDESQASRLISRHSTHTPLPSSNSPPHRRCRHGHKPSHHRL*SQNRR 339
           +SPP  Q    S+A R     S   PLP+   P HRR      PS  RL S  RR
Sbjct: 1   MSPPPPQRPSPSRAGRANLFSSPPPPLPNCYDPKHRRPAPPPLPSARRLPSNRRR 55


>08_01_0527 +
           4580599-4580818,4580933-4581806,4581891-4581955,
           4582055-4582110,4582955-4583058,4583310-4583382,
           4583474-4583654,4584537-4584622
          Length = 552

 Score = 32.3 bits (70), Expect = 0.47
 Identities = 24/85 (28%), Positives = 38/85 (44%), Gaps = 5/85 (5%)
 Frame = -3

Query: 611 QSLTPNRRSSRRVKPPLSSEAPSAYLTPSSLGMXKGVSPPYFQVNDESQASRLIS---RH 441
           Q ++P RR +R         +P            K + PP+ +V  +S+  + +S   R 
Sbjct: 224 QDISPPRRRTRHDSEEPQDLSPPRRKGRHDSEEPKDLLPPWRRVRHDSEEPKDLSPPRRR 283

Query: 440 STH-TPLPSSNSPPHRRCRH-GHKP 372
           + H +  P   SPP RR RH  H+P
Sbjct: 284 TRHDSEEPEDLSPPRRRTRHDSHEP 308


>02_05_0897 +
           32603060-32603387,32604348-32604589,32604681-32604824,
           32604889-32605050,32605129-32605212,32605528-32605601,
           32605850-32606039,32606120-32606275,32606368-32606465,
           32606976-32607102,32607193-32607292,32607402-32607572,
           32607790-32607838,32607912-32608003,32608705-32608774,
           32608999-32609023,32609059-32609293,32609425-32609525,
           32609614-32609865
          Length = 899

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 18/67 (26%), Positives = 28/67 (41%), Gaps = 1/67 (1%)
 Frame = -3

Query: 623 TPFHQSLTPNRRSSRRVKPPLSSEAPSAYLTPSSLGMXKGVSPPYFQVNDESQASRLISR 444
           TP H S TP R     ++ P ++  P+   TP        +SPP   +  +S     + +
Sbjct: 652 TPVHPSRTPLRPFQTPLRDPGATPVPNGMRTPMPSRAWAPMSPPRLALGWQSMPGTPVPQ 711

Query: 443 -HSTHTP 426
            H   TP
Sbjct: 712 PHEAPTP 718


>11_03_0178 +
           11280174-11280342,11280429-11280497,11281494-11281703,
           11282314-11282435,11282436-11282633
          Length = 255

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 22/79 (27%), Positives = 32/79 (40%), Gaps = 8/79 (10%)
 Frame = -3

Query: 593 RRSSRRVKPPLSSEAPSAYLTPSSLGMXKGVSPPYFQVNDESQASRLISRHS-------- 438
           RR++RR+K   +    +  +      +  GVSPP  +  +  Q   L  RH         
Sbjct: 64  RRTTRRLKNVNALVYNTKNMISKLQTLEGGVSPPVLRRREPRQGPGLEMRHGRGWGQRYH 123

Query: 437 THTPLPSSNSPPHRRCRHG 381
           TH  LP    P H+  R G
Sbjct: 124 THGQLPCGEPPCHQEARSG 142


>10_08_1037 - 22477358-22478752
          Length = 464

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 15/41 (36%), Positives = 19/41 (46%)
 Frame = -3

Query: 686 LPXXGNQPDHQSRSXHHHPRLTPFHQSLTPNRRSSRRVKPP 564
           LP    QP HQ    H H  L P HQ   P     ++++PP
Sbjct: 238 LPASPPQPQHQH---HPHRPLPPQHQQPKPPSMRLQKIRPP 275


>04_04_1150 + 31278367-31278885,31280065-31281278,31281759-31283355
          Length = 1109

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 14/44 (31%), Positives = 15/44 (34%)
 Frame = -3

Query: 698 PRQHLPXXGNQPDHQSRSXHHHPRLTPFHQSLTPNRRSSRRVKP 567
           PR H     +Q        HHH R    H      RR SR   P
Sbjct: 123 PRDHRDQHDHQSQRHHHRHHHHQRQRHHHHHQRQQRRGSRTRDP 166


>07_03_0487 -
           18663890-18663964,18664286-18664441,18664693-18665295,
           18665566-18665894,18665992-18666504,18667128-18667242,
           18667326-18667397,18667480-18667644,18668604-18668752,
           18668830-18668899,18668975-18669121,18669199-18669267,
           18669366-18669416,18669537-18669629,18670122-18670211
          Length = 898

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 23/68 (33%), Positives = 30/68 (44%), Gaps = 2/68 (2%)
 Frame = -3

Query: 605 LTPNRRSSRRVKPPLSSEAPSAYLTPSSLGMXKGVSPPYFQVNDE--SQASRLISRHSTH 432
           L P RRS R  KPP SS      +  S +   +       QV     SQ + +   H T 
Sbjct: 618 LQPKRRS-RTAKPPGSSSDTGEVVNSSRISNSQNAVSMGQQVLQALASQNTNVNRSHVTD 676

Query: 431 TPLPSSNS 408
           +PLPS+ S
Sbjct: 677 SPLPSTTS 684


>02_01_0302 - 2021221-2023305
          Length = 694

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 26/101 (25%), Positives = 36/101 (35%), Gaps = 2/101 (1%)
 Frame = -3

Query: 698 PRQHLPXXGNQPDHQSR-SXHHHPRLTPFHQSLTPNRRSSRRVKPPLSSEAPSAYLTPSS 522
           P  H P  G+     S  S +     TP H S  P   +     PP SS  PS +  P  
Sbjct: 454 PSSHSPPGGSSSTTPSYPSPNGGKPSTPSHPS-PPGSTTPSYPSPPSSSTTPSYHSPPQG 512

Query: 521 LGMXKGVSPPYFQVNDESQA-SRLISRHSTHTPLPSSNSPP 402
                  SPP       S +  +    H ++   P + +PP
Sbjct: 513 HTTPSHPSPPSSSTAPPSHSPPQSTPTHPSYPSPPVTYTPP 553


>01_05_0014 - 17162664-17163500
          Length = 278

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 14/57 (24%), Positives = 26/57 (45%), Gaps = 3/57 (5%)
 Frame = -3

Query: 575 VKPPLSSEAPSAYLTPSSLGMXKGVSPP---YFQVNDESQASRLISRHSTHTPLPSS 414
           +K  +  ++P+   TP  LG+ K   PP   Y           ++ +++T T  PS+
Sbjct: 87  IKTKIRGDSPARQPTPGELGLLKAAPPPAERYVGTLFTKAGDEVLHKYTTPTATPST 143


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,719,547
Number of Sequences: 37544
Number of extensions: 393869
Number of successful extensions: 1381
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1309
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1375
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2197677108
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)