Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP17_T7_L10
(769 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0... 127 2e-30
SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ... 124 2e-29
SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit S2|S... 41 2e-04
SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|... 30 0.42
SPAC27E2.06c |||methionine-tRNA ligase, mitochondrial|Schizosacc... 28 1.3
SPCC736.06 |||aspartate-tRNA ligase|Schizosaccharomyces pombe|ch... 27 3.0
SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces... 26 5.2
SPBC12C2.01c ||SPBC17F3.03c|sequence orphan|Schizosaccharomyces ... 26 6.8
>SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0A
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 292
Score = 127 bits (307), Expect = 2e-30
Identities = 59/92 (64%), Positives = 70/92 (76%)
Frame = -1
Query: 631 FREPXXLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMW 452
+REP ++V DP D Q I EAS+VNIPVIALC+TDS L VDIAIP N K SIGL+W
Sbjct: 118 YREPRLIVVTDPRADAQAIKEASFVNIPVIALCDTDSILNHVDIAIPTNNKGRKSIGLIW 177
Query: 451 WLLAREVLRLRGVLPRDQRWDVVVDLFFYREP 356
+LLAREVLR+RG L R WDV+ DL+FYR+P
Sbjct: 178 YLLAREVLRVRGTLSRSAPWDVMPDLYFYRDP 209
Score = 49.6 bits (113), Expect = 5e-07
Identities = 23/46 (50%), Positives = 27/46 (58%)
Frame = -3
Query: 767 PXXFLLFYSRPFGQRAVXNFXAHTGXTXIAGRFTPGVFXNQIQAAF 630
P + +R +G RAV F AHTG T IAGRFTPG F N I +
Sbjct: 73 PADVCVVSTRTYGHRAVLKFAAHTGATAIAGRFTPGNFTNYITRTY 118
>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
S0B|Schizosaccharomyces pombe|chr 1|||Manual
Length = 287
Score = 124 bits (298), Expect = 2e-29
Identities = 58/92 (63%), Positives = 69/92 (75%)
Frame = -1
Query: 631 FREPXXLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMW 452
+REP +IV DP D Q I EAS+VNIPVIALC+TDS L VD+AIP N K SIGL W
Sbjct: 119 YREPRLIIVTDPRADAQAIKEASFVNIPVIALCDTDSILNHVDVAIPINNKGYKSIGLAW 178
Query: 451 WLLAREVLRLRGVLPRDQRWDVVVDLFFYREP 356
+LLAREVLRLRG + R W+V+ DL+FYR+P
Sbjct: 179 YLLAREVLRLRGNISRTTAWEVMPDLYFYRDP 210
Score = 54.4 bits (125), Expect = 2e-08
Identities = 25/46 (54%), Positives = 28/46 (60%)
Frame = -3
Query: 767 PXXFLLFYSRPFGQRAVXNFXAHTGXTXIAGRFTPGVFXNQIQAAF 630
P + SRP+G RAV F AHTG T IAGRFTPG F N I +
Sbjct: 74 PADVCVISSRPYGHRAVLKFAAHTGATAIAGRFTPGNFTNYITRTY 119
>SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit
S2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 263
Score = 40.7 bits (91), Expect = 2e-04
Identities = 21/73 (28%), Positives = 36/73 (49%)
Frame = -1
Query: 655 LXTRSKLHFREPXXLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKS 476
+ T K + P +++L+P ++ EA ++P I + +TD+ R V IP N S
Sbjct: 169 IQTDKKPSYVFPDLMVILNPLENKSACLEAQKTHVPTIGIIDTDADPRMVTYPIPANDDS 228
Query: 475 SHSIGLMWWLLAR 437
L+ LL+R
Sbjct: 229 LRCTDLIAGLLSR 241
>SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 194
Score = 29.9 bits (64), Expect = 0.42
Identities = 19/43 (44%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
Frame = +3
Query: 351 LQGSR*KNKSTTTSQRWSRG---STPRSLSTSRANNHHIKPIE 470
L S+ N+S+T +++ SR ST RS STS AN H K E
Sbjct: 99 LTSSKAANRSSTNTEKDSRSIAHSTSRSRSTSPANRHRRKEKE 141
>SPAC27E2.06c |||methionine-tRNA ligase,
mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual
Length = 539
Score = 28.3 bits (60), Expect = 1.3
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = -1
Query: 574 TEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSI 464
T A + + LC+ +S RF D+A+ NTK +H I
Sbjct: 75 TVAQTEGVSPLQLCDRNSK-RFADLAVAANTKFTHFI 110
>SPCC736.06 |||aspartate-tRNA ligase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 611
Score = 27.1 bits (57), Expect = 3.0
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = -2
Query: 420 VVCFPVTSAGMLWLICSSTVNPEESEKD 337
V+ FP TS+G LI S + PEE KD
Sbjct: 571 VIAFPKTSSGADLLIGSPSAIPEEMLKD 598
>SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 561
Score = 26.2 bits (55), Expect = 5.2
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -1
Query: 466 IGLMWWLLAREVLRLRGVLPRDQRWD 389
IGL W L REV R + + R++ WD
Sbjct: 365 IGLKWTLKLREVERKQLLTAREKWWD 390
>SPBC12C2.01c ||SPBC17F3.03c|sequence orphan|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 318
Score = 25.8 bits (54), Expect = 6.8
Identities = 18/58 (31%), Positives = 24/58 (41%)
Frame = -1
Query: 676 DVSHQVFLXTRSKLHFREPXXLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVD 503
+ + ++FL HF L+VL H T Y I I NT+ LRF D
Sbjct: 249 ETAQKIFLSLCFSQHFPSEKLLMVL---LLHGTETMQEYAMIQAINFVNTEQKLRFYD 303
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,760,053
Number of Sequences: 5004
Number of extensions: 50958
Number of successful extensions: 133
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 369323696
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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