Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP17_T7_K23
         (779 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC965.09 |||nitrilase |Schizosaccharomyces pombe|chr 3|||Manual      40   4e-04
SPAC637.10c |rpn10|pus1|19S proteasome regulatory subunit Rpn10|...    27   2.3  
SPBC28F2.03 |ppi1|cyp2|cyclophilin family peptidyl-prolyl cis-tr...    26   5.3  

>SPCC965.09 |||nitrilase |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 272

 Score = 39.9 bits (89), Expect = 4e-04
 Identities = 40/169 (23%), Positives = 70/169 (41%), Gaps = 3/169 (1%)
 Frame = -2

Query: 664 ESNYYMEGNPGHPVXATRYGKIAVNXCFGRHHVLNWMMFGQNGAEIVFNPSATIAGEGGS 485
           E  ++ +G+   P+  T +GK+ V  C+         +   NGA+++      +A    +
Sbjct: 125 ERKHFKKGSD-FPIFETSFGKLGVMICWDTAFPEVARIHALNGADLL-----VVATNWEN 178

Query: 484 EYM--WNVEARNAAITNCYFTAAINRVGYEEFPNEFTSADGKPAHKDLGLFYGSSYFCGP 311
            Y   W++  +  A  NC    A NRVG +E  +                F+G S   GP
Sbjct: 179 PYSDDWDLVTKARAFENCIPLVAANRVGTDEKLS----------------FFGHSKIIGP 222

Query: 310 DGVRCPGLSRTRDGLLIAAVDLNLNRQIRDRRCYYMTQRL-DMYVNSLS 167
            G     L   ++G++   VDL+  + +R     +   R+ D+Y   LS
Sbjct: 223 TGKVIKALDEEKEGVISYTVDLDDAKPLRKNYYTFFEDRMPDLYKRLLS 271


>SPAC637.10c |rpn10|pus1|19S proteasome regulatory subunit
           Rpn10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 243

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 10/25 (40%), Positives = 18/25 (72%)
 Frame = +3

Query: 441 FVIAAFLASTFHMYSLPPSPAIVAD 515
           F+ AA  + + H+ S+PPSP +++D
Sbjct: 156 FIDAANSSDSCHLVSIPPSPQLLSD 180


>SPBC28F2.03 |ppi1|cyp2|cyclophilin family peptidyl-prolyl cis-trans
           isomerase Cyp2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 162

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 14/30 (46%), Positives = 15/30 (50%)
 Frame = +2

Query: 569 VVPSEAXVHRDLAVSGRXYRMAGVTFHVVI 658
           VVP  A   R L    + Y  AG TFH VI
Sbjct: 26  VVPKTAANFRALCTGEKGYGYAGSTFHRVI 55


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,763,490
Number of Sequences: 5004
Number of extensions: 52758
Number of successful extensions: 145
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 377352472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)