Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP17_T7_K19
         (767 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein L3|Sch...   196   4e-51
SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3 |Schiz...   196   4e-51
SPAC17D4.02 |cdc45|sna41, goa1|DNA replication pre-initiation co...    27   2.2  
SPBC24C6.09c |||phosphoketolase |Schizosaccharomyces pombe|chr 2...    27   3.0  
SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr...    27   3.9  
SPBC21C3.06 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    26   6.8  
SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex su...    25   9.0  

>SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein
           L3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score =  196 bits (477), Expect = 4e-51
 Identities = 100/184 (54%), Positives = 122/184 (66%)
 Frame = -2

Query: 664 QXEXXXXIGVXQGPRXQRGHFLVAHKRXYPVRHNKGFRKVACIGAWHPFRVSFTVARAGQ 485
           Q E    IGV +G +   G       +  P + ++G RKVACIGAWHP  V +TVARAG 
Sbjct: 211 QNEMIDVIGVTRG-KGNEGTTARWGTKRLPRKTHRGLRKVACIGAWHPANVQWTVARAGN 269

Query: 484 KGYHHRTEMNKKSIVLDQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFV 305
            GY HRT++N K   +  G    D K    NAST++D +EK ITPMGGF  YG V NDFV
Sbjct: 270 AGYMHRTQLNSKIYRIGAG---DDAK----NASTDFDATEKRITPMGGFVRYGVVENDFV 322

Query: 304 MIKGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGT 125
           M+ G   GP KR++TLRKSL  HT R ALE ++LK+IDT+SKFGHGRFQTPA+   F+GT
Sbjct: 323 MLNGATPGPVKRVLTLRKSLLTHTSRKALEPVSLKWIDTASKFGHGRFQTPAEAKQFLGT 382

Query: 124 LKKD 113
           LKKD
Sbjct: 383 LKKD 386


>SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score =  196 bits (477), Expect = 4e-51
 Identities = 100/184 (54%), Positives = 122/184 (66%)
 Frame = -2

Query: 664 QXEXXXXIGVXQGPRXQRGHFLVAHKRXYPVRHNKGFRKVACIGAWHPFRVSFTVARAGQ 485
           Q E    IGV +G +   G       +  P + ++G RKVACIGAWHP  V +TVARAG 
Sbjct: 211 QNEMIDVIGVTRG-KGNEGTTARWGTKRLPRKTHRGLRKVACIGAWHPANVQWTVARAGN 269

Query: 484 KGYHHRTEMNKKSIVLDQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFV 305
            GY HRT++N K   +  G    D K    NAST++D +EK ITPMGGF  YG V NDFV
Sbjct: 270 AGYMHRTQLNSKIYRIGAG---DDAK----NASTDFDATEKRITPMGGFVRYGVVENDFV 322

Query: 304 MIKGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGT 125
           M+ G   GP KR++TLRKSL  HT R ALE ++LK+IDT+SKFGHGRFQTPA+   F+GT
Sbjct: 323 MLNGATPGPVKRVLTLRKSLLTHTSRKALEPVSLKWIDTASKFGHGRFQTPAEAKQFLGT 382

Query: 124 LKKD 113
           LKKD
Sbjct: 383 LKKD 386


>SPAC17D4.02 |cdc45|sna41, goa1|DNA replication pre-initiation
           complex subunit Cdc45|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 638

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -3

Query: 447 LSYWTKESTKRMAKLLKTMHLLSMTCLRNPLH 352
           L  W++E  KR+ KLL  M L  + C +  +H
Sbjct: 337 LHIWSEEGRKRLHKLLAKMGLSLVECKQTYIH 368


>SPBC24C6.09c |||phosphoketolase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 825

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 4/42 (9%)
 Frame = +2

Query: 341 TSHWCNGFLRQVILS-RCIVFNN---FAILFVDSLVQYDRFL 454
           + H C GF++   L+ R  +F +   F  + V  LVQY +FL
Sbjct: 492 SEHLCQGFMQGYTLTGRTAIFPSYEAFMTIVVSMLVQYSKFL 533


>SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 511

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -1

Query: 134 HGYTQEGSYSRRSCGYHNPS 75
           HGY+   +  R+ C YHNPS
Sbjct: 307 HGYSMY-ALERKMCNYHNPS 325


>SPBC21C3.06 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 122

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +3

Query: 381 SVDALFLITLPSFLWIPW 434
           +VDA+F I+  +FLW  W
Sbjct: 11  TVDAIFAISSSTFLWSTW 28


>SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex
           subunit Mtr4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1117

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 16/43 (37%), Positives = 24/43 (55%)
 Frame = -3

Query: 474 ITVLK*TRNLSYWTKESTKRMAKLLKTMHLLSMTCLRNPLHQW 346
           IT+L    N++   KE T    KL+K +++L    L NPLH +
Sbjct: 848 ITLLDPVENMNI--KEPT--FIKLMKKVNILESRLLSNPLHNF 886


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,925,785
Number of Sequences: 5004
Number of extensions: 59556
Number of successful extensions: 160
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 369323696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)