Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP17_T7_K15
         (801 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1539.02 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    26   5.4  
SPBC17D11.04c |||histone acetyltransferase complex subunit Nto1 ...    26   5.4  
SPAC637.12c |mst1||histone acetyltransferase Mst1|Schizosaccharo...    26   5.4  
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc...    26   7.2  
SPBC28E12.01c |apc13|SPBC9B6.12c|anaphase-promoting complex subu...    25   9.5  

>SPBC1539.02 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 386

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
 Frame = -3

Query: 208 RPHRDVPLRQPATDV-RVRLSHIPPSALRHHVRSRRAAQDTQ 86
           R H+   L  P   + R +LSH   S +  H  ++ + +DTQ
Sbjct: 35  RKHKTAKLEAPRALIKRKQLSHSTSSDITRHSNAKNSGKDTQ 76


>SPBC17D11.04c |||histone acetyltransferase complex subunit Nto1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 767

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = +2

Query: 266 PLSLFREQVVLRDEREEPAPPHRVAGVHRLHPE 364
           P+S+F+ QV      E P    R  G+H  H E
Sbjct: 690 PISMFQNQVAQFSTIEIPKMSGRANGMHNFHSE 722


>SPAC637.12c |mst1||histone acetyltransferase
           Mst1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 463

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
 Frame = +2

Query: 263 KPLSLFREQVV--LRDEREEPAPPHRVAGVHRLHPECCGD 376
           KP SL +EQ V  LR        PH +A +  ++  C GD
Sbjct: 152 KPESLSKEQEVERLRFSGSMVQNPHEIARIRNINKICIGD 191


>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
            Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1958

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +1

Query: 367  LWRHLPISASSAPWSLTLHRC 429
            L  HL ++ASS  WSL  H C
Sbjct: 1767 LSNHLCLTASSTEWSLIKHWC 1787


>SPBC28E12.01c |apc13|SPBC9B6.12c|anaphase-promoting complex subunit
           Apc13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 135

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -3

Query: 184 RQPATDVRVRLSHIPP 137
           R P  DV VR+ H+PP
Sbjct: 26  RLPVDDVEVRVEHLPP 41


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,571,022
Number of Sequences: 5004
Number of extensions: 43504
Number of successful extensions: 93
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 388424860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)