Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP17_T7_K15
         (801 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_04_0169 + 14397380-14397652,14398317-14398874,14399593-143998...    36   0.028
04_04_0342 - 24522035-24522869,24523001-24523137,24523243-245236...    31   0.81 
03_02_0513 + 9035204-9035422,9035552-9036091,9036512-9036742,903...    31   1.4  
01_03_0005 + 11568545-11569119,11569179-11569191                       29   3.3  
10_08_0732 - 20173816-20174137,20175824-20176023,20176099-20176998     29   5.7  
10_08_0521 + 18500105-18500529,18501216-18501284,18501467-185015...    28   9.9  
07_03_0203 + 15138864-15140452,15140629-15140726,15141924-151422...    28   9.9  
07_01_0539 - 3985623-3986653,3986752-3987046                           28   9.9  

>11_04_0169 +
           14397380-14397652,14398317-14398874,14399593-14399823,
           14399924-14400064,14401051-14401248,14401319-14401591,
           14401959-14401976
          Length = 563

 Score = 36.3 bits (80), Expect = 0.028
 Identities = 18/49 (36%), Positives = 29/49 (59%)
 Frame = +3

Query: 324 RLIESRESIAFTPNVVETFADLRVLRAVVADLAQMRGGQRLFTNWSSAS 470
           RL+ ++E + F+    E   DL  L A+ A+LA+  GGQ  F  W++A+
Sbjct: 262 RLLTAKEEVEFS----EGIQDLLKLEAIQAELAEYNGGQPTFAQWATAA 306


>04_04_0342 -
           24522035-24522869,24523001-24523137,24523243-24523683,
           24523879-24524096,24524263-24524350
          Length = 572

 Score = 31.5 bits (68), Expect = 0.81
 Identities = 23/71 (32%), Positives = 30/71 (42%), Gaps = 1/71 (1%)
 Frame = +3

Query: 345 SIAFTPNVVETFADLRVLRAVVADLAQMRGGQRLFT-NWSSASRXNTXPGRXHVPLGA*T 521
           S+  T NV ET A LRVL   ++ L        LFT         NT  GR HV      
Sbjct: 311 SVCSTKNVEETKAVLRVLPVFISSLIGYMSNPLLFTFTVQQGGLTNTRLGRIHVSPATLF 370

Query: 522 VEPASXXXGIL 554
           + P++    +L
Sbjct: 371 IIPSAFQMALL 381


>03_02_0513 +
           9035204-9035422,9035552-9036091,9036512-9036742,
           9036829-9036969,9037344-9037541,9037644-9037937
          Length = 540

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 14/49 (28%), Positives = 27/49 (55%)
 Frame = +3

Query: 324 RLIESRESIAFTPNVVETFADLRVLRAVVADLAQMRGGQRLFTNWSSAS 470
           RL+ +++ + F+  +     DL  L A+  +LA   GG+  F+ W+ A+
Sbjct: 238 RLLTAKQEVEFSQGI----QDLLKLEAIQKELAHYNGGEPTFSQWAEAA 282


>01_03_0005 + 11568545-11569119,11569179-11569191
          Length = 195

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 14/41 (34%), Positives = 16/41 (39%)
 Frame = +1

Query: 634 PXPPPPGGXSXXXFXXGGFFFXPPKXFXXXLXGEXXPGGGG 756
           P PP  GG        GG ++ PP        G    GGGG
Sbjct: 93  PPPPYSGGGGGSSTGGGGIYYPPPTGGGGGGGGGWQQGGGG 133


>10_08_0732 - 20173816-20174137,20175824-20176023,20176099-20176998
          Length = 473

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 16/47 (34%), Positives = 22/47 (46%)
 Frame = +1

Query: 103 LAGSERDAVRPKVVYEIVEHVHLLRVDVVERHGVVGTTIQALVAGVV 243
           L G  R       +Y + EHV ++   V+ERHGV    I A   G +
Sbjct: 233 LLGFGRSPKPADSLYTLREHVEMIERSVIERHGVKSFHIVAHSLGSI 279


>10_08_0521 +
           18500105-18500529,18501216-18501284,18501467-18501555,
           18501726-18501838,18502023-18502124,18502576-18502663,
           18502795-18503361,18503766-18504149,18504168-18504384,
           18504466-18504548,18505174-18505256,18505796-18506032,
           18506481-18506658,18506814-18507328,18507740-18507916,
           18508385-18508768,18508885-18509031
          Length = 1285

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 13/22 (59%), Positives = 16/22 (72%)
 Frame = -3

Query: 178 PATDVRVRLSHIPPSALRHHVR 113
           PAT  R+RL   PPS+LRH +R
Sbjct: 113 PATVFRIRLKQ-PPSSLRHKMR 133


>07_03_0203 +
           15138864-15140452,15140629-15140726,15141924-15142235,
           15142437-15142749,15144025-15146023,15147033-15147068
          Length = 1448

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 17/63 (26%), Positives = 27/63 (42%)
 Frame = +1

Query: 91  YLGQLAGSERDAVRPKVVYEIVEHVHLLRVDVVERHGVVGTTIQALVAGVVDVAPVPEAL 270
           ++    G+E D V     YE+V    +  VDV     V+  T+  +V  V+    + E  
Sbjct: 5   FISLTQGTEIDRVAENYFYELVNRGMIQPVDVDYNDEVISCTVHHMVLDVITNKSMEENF 64

Query: 271 VLV 279
           V V
Sbjct: 65  VTV 67


>07_01_0539 - 3985623-3986653,3986752-3987046
          Length = 441

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = -1

Query: 261 WYWSYIYYPSDEGLDCCSDHTVTFHYVNPQQMYVFDYL 148
           W++++++  S+ GL   SD    F Y        FDY+
Sbjct: 87  WWYTFLHKHSELGLSAPSDEGEAFRYFFRTSRRTFDYI 124


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,010,974
Number of Sequences: 37544
Number of extensions: 435153
Number of successful extensions: 995
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 952
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 991
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2174172540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)