Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP17_T7_K09
(730 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z27078-7|CAE52901.2| 1502|Caenorhabditis elegans Hypothetical pr... 29 4.5
Z27078-6|CAA81584.4| 1759|Caenorhabditis elegans Hypothetical pr... 29 4.5
X56979-1|CAA40299.1| 1758|Caenorhabditis elegans alpha1(IV) coll... 29 4.5
U50071-2|AAA93447.2| 6994|Caenorhabditis elegans Uncoordinated p... 28 5.9
U39847-1|AAB41827.1| 6994|Caenorhabditis elegans AO13 ankyrin pr... 28 5.9
Z22964-2|CAA80537.1| 1759|Caenorhabditis elegans a2(IV) collagen... 28 7.9
Z22964-1|CAA80536.1| 1758|Caenorhabditis elegans a2(IV) collagen... 28 7.9
U53342-4|AAA96216.1| 1758|Caenorhabditis elegans Lethal protein ... 28 7.9
U53342-3|AAA96215.1| 1759|Caenorhabditis elegans Lethal protein ... 28 7.9
U22327-1|AAA64312.1| 1795|Caenorhabditis elegans alpha2(IV) coll... 28 7.9
AL034392-5|CAE17989.1| 134|Caenorhabditis elegans Hypothetical ... 28 7.9
AF000263-19|AAG00021.1| 321|Caenorhabditis elegans Collagen pro... 28 7.9
AC006701-4|AAK68403.2| 606|Caenorhabditis elegans Hypothetical ... 28 7.9
>Z27078-7|CAE52901.2| 1502|Caenorhabditis elegans Hypothetical protein
K04H4.1b protein.
Length = 1502
Score = 28.7 bits (61), Expect = 4.5
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +3
Query: 513 PRGSDGYPAKTGLNNLKG 566
PRG DG+P + GL+ L G
Sbjct: 1153 PRGDDGFPGRDGLDGLPG 1170
>Z27078-6|CAA81584.4| 1759|Caenorhabditis elegans Hypothetical protein
K04H4.1a protein.
Length = 1759
Score = 28.7 bits (61), Expect = 4.5
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +3
Query: 513 PRGSDGYPAKTGLNNLKG 566
PRG DG+P + GL+ L G
Sbjct: 1410 PRGDDGFPGRDGLDGLPG 1427
>X56979-1|CAA40299.1| 1758|Caenorhabditis elegans alpha1(IV) collagen
protein.
Length = 1758
Score = 28.7 bits (61), Expect = 4.5
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +3
Query: 513 PRGSDGYPAKTGLNNLKG 566
PRG DG+P + GL+ L G
Sbjct: 1409 PRGDDGFPGRDGLDGLPG 1426
>U50071-2|AAA93447.2| 6994|Caenorhabditis elegans Uncoordinated
protein 44, isoform f protein.
Length = 6994
Score = 28.3 bits (60), Expect = 5.9
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = -3
Query: 491 HDDLDLESISKYLQSASMRHFDKAARHENPLIVAAGNYI 375
H D + E+ ++ + S RH + E+P IV +G YI
Sbjct: 5374 HSDEEDENDAEVIDSEFYRHSQEQNNEEDPSIVESGEYI 5412
>U39847-1|AAB41827.1| 6994|Caenorhabditis elegans AO13 ankyrin
protein.
Length = 6994
Score = 28.3 bits (60), Expect = 5.9
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = -3
Query: 491 HDDLDLESISKYLQSASMRHFDKAARHENPLIVAAGNYI 375
H D + E+ ++ + S RH + E+P IV +G YI
Sbjct: 5374 HSDEEDENDAEVIDSEFYRHSQEQNNEEDPSIVESGEYI 5412
>Z22964-2|CAA80537.1| 1759|Caenorhabditis elegans a2(IV) collagen
protein.
Length = 1759
Score = 27.9 bits (59), Expect = 7.9
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = +3
Query: 516 RGSDGYPAKTGLNNLKGFKCLXG 584
RG+DGYP GL+ KG L G
Sbjct: 1480 RGNDGYPGAPGLSGEKGMGGLPG 1502
>Z22964-1|CAA80536.1| 1758|Caenorhabditis elegans a2(IV) collagen
protein.
Length = 1758
Score = 27.9 bits (59), Expect = 7.9
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = +3
Query: 516 RGSDGYPAKTGLNNLKGFKCLXG 584
RG+DGYP GL+ KG L G
Sbjct: 1479 RGNDGYPGAPGLSGEKGMGGLPG 1501
>U53342-4|AAA96216.1| 1758|Caenorhabditis elegans Lethal protein 2,
isoform a protein.
Length = 1758
Score = 27.9 bits (59), Expect = 7.9
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = +3
Query: 516 RGSDGYPAKTGLNNLKGFKCLXG 584
RG+DGYP GL+ KG L G
Sbjct: 1479 RGNDGYPGAPGLSGEKGMGGLPG 1501
>U53342-3|AAA96215.1| 1759|Caenorhabditis elegans Lethal protein 2,
isoform b protein.
Length = 1759
Score = 27.9 bits (59), Expect = 7.9
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = +3
Query: 516 RGSDGYPAKTGLNNLKGFKCLXG 584
RG+DGYP GL+ KG L G
Sbjct: 1480 RGNDGYPGAPGLSGEKGMGGLPG 1502
>U22327-1|AAA64312.1| 1795|Caenorhabditis elegans alpha2(IV) collagen
protein.
Length = 1795
Score = 27.9 bits (59), Expect = 7.9
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = +3
Query: 516 RGSDGYPAKTGLNNLKGFKCLXG 584
RG+DGYP GL+ KG L G
Sbjct: 1516 RGNDGYPGAPGLSGEKGMGGLPG 1538
>AL034392-5|CAE17989.1| 134|Caenorhabditis elegans Hypothetical
protein Y40B1A.5 protein.
Length = 134
Score = 27.9 bits (59), Expect = 7.9
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -3
Query: 368 PADRMESSRRRPKHVISDPPDP 303
P ++RRR +HV+S PP P
Sbjct: 4 PVVEFTTARRRKRHVVSTPPPP 25
>AF000263-19|AAG00021.1| 321|Caenorhabditis elegans Collagen
protein 56 protein.
Length = 321
Score = 27.9 bits (59), Expect = 7.9
Identities = 13/28 (46%), Positives = 15/28 (53%)
Frame = +3
Query: 504 PDEPRGSDGYPAKTGLNNLKGFKCLXGR 587
P+ P G G P K GL+ GF L GR
Sbjct: 97 PECPSGPPGRPGKPGLDGEPGFDGLPGR 124
>AC006701-4|AAK68403.2| 606|Caenorhabditis elegans Hypothetical
protein Y104H12D.3 protein.
Length = 606
Score = 27.9 bits (59), Expect = 7.9
Identities = 10/38 (26%), Positives = 21/38 (55%)
Frame = +3
Query: 306 IRRIRDDVFRATSTAFHSVRRIGNVVTGGHDERVLVSC 419
+R++ ++ + T FH + VV GG E ++++C
Sbjct: 176 VRKMEAEILKMTCAMFHGGKDSCGVVAGGGTEALMLAC 213
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,366,060
Number of Sequences: 27780
Number of extensions: 254748
Number of successful extensions: 764
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 659
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 764
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1718929214
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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