Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP17_T7_K08
         (734 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC7D4.03c |||conserved fungal family|Schizosaccharomyces pombe...    29   0.69 
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||...    28   1.2  
SPBC1604.06c |||CBF/Mak21 family|Schizosaccharomyces pombe|chr 2...    26   6.4  
SPBP4H10.17c |||carboxyl methyl esterase|Schizosaccharomyces pom...    25   8.5  

>SPAC7D4.03c |||conserved fungal family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 886

 Score = 29.1 bits (62), Expect = 0.69
 Identities = 15/30 (50%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = +1

Query: 499 RSHDGVLPT*ARMRLTVSKHVGC-FSSIRG 585
           RS  GVLP  ++M L  S H+ C  SSI+G
Sbjct: 798 RSSHGVLPVQSKMLLYNSNHISCPLSSIKG 827


>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 3227

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 25/100 (25%), Positives = 47/100 (47%), Gaps = 2/100 (2%)
 Frame = -1

Query: 488  DALEFSKQA--HLIRKQADTLYKTMKDLFTVPDGLSFWEFFSARVVHFKKITAKLTSDEL 315
            DA   S++A  HL+R+  D   KTM DL  +P   +            +K+   +    L
Sbjct: 1729 DAQTVSQKAPNHLLRRSQDQNVKTMIDLGYIPTLTNAISEIDMNYPVSRKVVRHILK-PL 1787

Query: 314  LEMVHEPLELSTPSPQSMQSAIEAANDEDTSVTEAIEENN 195
              +  E + LS  +P+++  A + +   D S++ + EE++
Sbjct: 1788 QLLTKEAIFLSQTNPEALSGAAQDSMG-DQSLSSSSEESS 1826


>SPBC1604.06c |||CBF/Mak21 family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 485

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = -1

Query: 575 LLKHPTCLETVKRMRAYVGNTPSWDLSEKDAL 480
           L +HPTC++ + R  A  G+  S+D  + D L
Sbjct: 373 LQRHPTCMQMLHRSSAESGD--SFDFDQPDPL 402


>SPBP4H10.17c |||carboxyl methyl esterase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 341

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 25/105 (23%), Positives = 43/105 (40%), Gaps = 2/105 (1%)
 Frame = -1

Query: 689 KLFELDAKIKLVYA*RXPTLNCVLIARRICGIRSEPLMLLK--HPTCLETVKRMRAYVGN 516
           ++FELD KI LV       + C   A +     +  L+++     T +E +  M+ Y+ N
Sbjct: 139 RMFELDEKIILVGHSLGGAI-CAYCAFQKTIPNTSGLVVIDVVEGTAMEALGFMKTYLSN 197

Query: 515 TPSWDLSEKDALEFSKQAHLIRKQADTLYKTMKDLFTVPDGLSFW 381
            P+   S  DA+ +  +  + R +          L    DG   W
Sbjct: 198 RPTSFKSIDDAISWHIKTLVTRNRLSACITVPSLLVQQEDGTFVW 242


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,367,451
Number of Sequences: 5004
Number of extensions: 43660
Number of successful extensions: 99
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 347244562
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)