Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP17_T7_K05
(772 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP8B7.07c |set6||histone lysine methyltransferase Set6 |Schizo... 35 0.015
SPBC31F10.10c |||zf-MYND type zinc finger protein|Schizosaccharo... 32 0.079
SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyce... 28 1.3
SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces pomb... 28 1.7
SPCC364.04c |||CASP family protein|Schizosaccharomyces pombe|chr... 27 2.2
SPCC645.13 |||transcription elongation regulator|Schizosaccharom... 27 2.2
SPAC22G7.09c |nup45||nucleoporin Nup45|Schizosaccharomyces pombe... 27 2.2
SPCC1259.14c |meu27||S. pombe specific UPF0300 family protein 5|... 27 3.9
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 27 3.9
SPAC11E3.06 |map1||MADS-box transcription factor Map1|Schizosacc... 26 5.2
SPAC23H3.02c |ini1||RING finger-like protein Ini1|Schizosaccharo... 26 5.2
SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase Ppk30|Schizos... 26 6.9
>SPBP8B7.07c |set6||histone lysine methyltransferase Set6
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 483
Score = 34.7 bits (76), Expect = 0.015
Identities = 20/55 (36%), Positives = 23/55 (41%), Gaps = 2/55 (3%)
Frame = -1
Query: 430 NASRQCVKCGAPA--DWYCSRCAITPYCSQTCQTRDWTERHKSVCHYLAPLKTAG 272
N +R C C C+ C I YCS+ CQ DW HK C L K G
Sbjct: 44 NLTRTCSTCTEEKVKTQRCAACKIIHYCSKGCQKADW-PFHKLECKALQASKQNG 97
>SPBC31F10.10c |||zf-MYND type zinc finger
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 574
Score = 32.3 bits (70), Expect = 0.079
Identities = 25/83 (30%), Positives = 38/83 (45%), Gaps = 2/83 (2%)
Frame = -1
Query: 442 GLERNASRQCVKCGAPADWY--CSRCAITPYCSQTCQTRDWTERHKSVCHYLAPLKTAGG 269
G+ R A+ C K + + C RC T YCS+ CQ + W H C + G
Sbjct: 476 GIRRCANLLCNKWEEHSRQFAKCRRCRRTKYCSKECQHQAW-PGHSRWCRVI----HKDG 530
Query: 268 FEAEATSSKSVSNSTPMRSSHSP 200
++ SSK +++ T S+ SP
Sbjct: 531 RNSKRESSK-INSVTESESTASP 552
>SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1151
Score = 28.3 bits (60), Expect = 1.3
Identities = 13/48 (27%), Positives = 27/48 (56%)
Frame = -1
Query: 223 PMRSSHSPPTKQQRGEADETDNKAKNIQEPRQNYHRPSNSGPNKNIPG 80
P RS + PP +++R + +++A +IQ + H P++ K++ G
Sbjct: 490 PTRSDN-PPNEKRRRTSSSENSRALDIQLSASDSHSPNSKSTLKSVEG 536
>SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1018
Score = 27.9 bits (59), Expect = 1.7
Identities = 24/94 (25%), Positives = 43/94 (45%), Gaps = 8/94 (8%)
Frame = -1
Query: 325 TERH--KSVCHYLAPL-KTAGGFEAEATSSKSVSNSTPM--RSSHSPPTKQQRGEADETD 161
T +H K++ H + P K G + + SS + ++ P ++S P K + E
Sbjct: 832 TNQHGFKTMHHNVNPFTKQNGIMKGKLPSSSTSQSNKPFIEKASMHAPAKGRNSSMQEPS 891
Query: 160 NKAKNIQEPRQNYHRPSNS-GPNKNI--PGKNQD 68
+K+ ++ P+ NY S PN ++ P N D
Sbjct: 892 SKSPLLKTPKSNYFPGYGSLSPNTSVELPEINSD 925
>SPCC364.04c |||CASP family protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 633
Score = 27.5 bits (58), Expect = 2.2
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Frame = -1
Query: 601 RHAEKRQVAPHSS--AGRSVLPDGRIVVRNNANETDSAEVE 485
R Q++P SS G L +G ++ RN+ NET SA V+
Sbjct: 445 REGTSGQLSPTSSIMGGNPSLFNGSVLSRNSVNETGSAIVD 485
>SPCC645.13 |||transcription elongation
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 721
Score = 27.5 bits (58), Expect = 2.2
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = -1
Query: 250 SSKSVSNSTPMRSSHSPP-TKQQRGEADETDNKAK 149
S ++ ST +SSHSPP T+++RG T K
Sbjct: 146 SPRTPIGSTTPKSSHSPPSTRKRRGSVGTTATHTK 180
>SPAC22G7.09c |nup45||nucleoporin Nup45|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 425
Score = 27.5 bits (58), Expect = 2.2
Identities = 20/77 (25%), Positives = 33/77 (42%), Gaps = 1/77 (1%)
Frame = +3
Query: 375 REQYQSAGAPHFTHWREAFRSSPGVFSDSEPAPANEGSTSAESVSLALFLTTIRPSGRTD 554
+ Q Q A A + ++ G+F + P + G S + S LF + +PSG T
Sbjct: 139 QSQTQPAQANTSLFGQSNIGTTGGLFDQNRPNTSTFGQFSTQPASAGLFGQSTQPSGSTG 198
Query: 555 LP-ADECGATCLFSACR 602
++ T FSA +
Sbjct: 199 FGLSNNTQTTPFFSAAQ 215
>SPCC1259.14c |meu27||S. pombe specific UPF0300 family protein
5|Schizosaccharomyces pombe|chr 3|||Manual
Length = 736
Score = 26.6 bits (56), Expect = 3.9
Identities = 16/80 (20%), Positives = 29/80 (36%), Gaps = 3/80 (3%)
Frame = -1
Query: 355 CSQTCQTRDWTERHKSVCHYLAPLKTAGGFEAEATSSKSVSNSTPMRS---SHSPPTKQQ 185
C C WT + APL G E+ + + +S +++ K +
Sbjct: 30 CDTHCSGSSWTSFKSKILKICAPLCCMGSDNDESMAEMPLEPQVEPKSIENNYTLKKKNE 89
Query: 184 RGEADETDNKAKNIQEPRQN 125
G + +NK+ N + N
Sbjct: 90 EGFLSQQENKSSNQNPSKAN 109
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 26.6 bits (56), Expect = 3.9
Identities = 16/63 (25%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
Frame = -1
Query: 253 TSSKSVSNSTPMRSSHSPPTKQQRGEADETD-NKAKNIQEPRQNYHRPSNSGPNKNIPGK 77
T +KS + + SPP T+ + A+ P++ RP S P++N P +
Sbjct: 462 TPAKSSEEAKSTTNDSSPPKDSSSTSTQPTEQSNAQQAPSPKEE-ERPLPSEPSQNQPAE 520
Query: 76 NQD 68
+D
Sbjct: 521 YRD 523
>SPAC11E3.06 |map1||MADS-box transcription factor
Map1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 398
Score = 26.2 bits (55), Expect = 5.2
Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Frame = -1
Query: 229 STPMRSSHSPP-TKQQRGEADETDNKAKNIQEPRQNYHRPSNSGPNKNIPGKNQDPRRPA 53
+T S +SPP T + R +++ Q PR+N R S N P +++ P P
Sbjct: 262 TTGQHSVNSPPSTYKHRRSLNKSFATRSEPQTPRKNKIRDSLQSSPLNFPPRDRPPLIP- 320
Query: 52 TSREAI 35
SR A+
Sbjct: 321 ISRIAV 326
>SPAC23H3.02c |ini1||RING finger-like protein
Ini1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 117
Score = 26.2 bits (55), Expect = 5.2
Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 3/29 (10%)
Frame = -1
Query: 418 QCVKCGAP--AD-WYCSRCAITPYCSQTC 341
+C+ CGAP +D +YCS C Y C
Sbjct: 57 RCIICGAPGVSDCYYCSECTRMEYDRDGC 85
>SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase
Ppk30|Schizosaccharomyces pombe|chr 2|||Manual
Length = 953
Score = 25.8 bits (54), Expect = 6.9
Identities = 17/59 (28%), Positives = 28/59 (47%)
Frame = -1
Query: 268 FEAEATSSKSVSNSTPMRSSHSPPTKQQRGEADETDNKAKNIQEPRQNYHRPSNSGPNK 92
F + S +++S P S + TKQ+ ++TDN I +P + P S PN+
Sbjct: 550 FSSSVGSKQNLSMDIP--SVQNVSTKQK--STNDTDNSKLKINKPLTGGYAPLPSRPNR 604
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,622,826
Number of Sequences: 5004
Number of extensions: 48842
Number of successful extensions: 219
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 206
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 218
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 371330890
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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