Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP17_T7_K02
(843 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z79596-1|CAB01857.1| 830|Caenorhabditis elegans Hypothetical pr... 29 5.5
L29031-1|AAB72228.2| 830|Caenorhabditis elegans dynamin protein. 29 5.5
U41557-6|AAA83307.1| 589|Caenorhabditis elegans Collagen sequen... 28 7.2
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 28 9.5
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 28 9.5
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 28 9.5
>Z79596-1|CAB01857.1| 830|Caenorhabditis elegans Hypothetical
protein C02C6.1a protein.
Length = 830
Score = 28.7 bits (61), Expect = 5.5
Identities = 17/59 (28%), Positives = 19/59 (32%)
Frame = +2
Query: 407 VXXPXPXPPGXGXXDXXPXSXXXPGPXVPTLXPPXXPXXXPXXXXXXXASSXPXPGGXP 583
V P P PPG G P P P + PP + P PGG P
Sbjct: 766 VPRPAPAPPG-GRQAPMPPRGGPGAPPPPGMRPPPGAPGGGGGMYPPLIPTRPGPGGPP 823
>L29031-1|AAB72228.2| 830|Caenorhabditis elegans dynamin protein.
Length = 830
Score = 28.7 bits (61), Expect = 5.5
Identities = 17/59 (28%), Positives = 19/59 (32%)
Frame = +2
Query: 407 VXXPXPXPPGXGXXDXXPXSXXXPGPXVPTLXPPXXPXXXPXXXXXXXASSXPXPGGXP 583
V P P PPG G P P P + PP + P PGG P
Sbjct: 766 VPRPAPAPPG-GRQAPMPPRGGPGAPPPPGMRPPPGAPGGGGGMYPPLIPTRPGPGGPP 823
>U41557-6|AAA83307.1| 589|Caenorhabditis elegans Collagen sequence
x-hybridizingprotein 1 protein.
Length = 589
Score = 28.3 bits (60), Expect = 7.2
Identities = 17/53 (32%), Positives = 18/53 (33%)
Frame = +2
Query: 416 PXPXPPGXGXXDXXPXSXXXPGPXVPTLXPPXXPXXXPXXXXXXXASSXPXPG 574
P PPG P S PGP P+ PP P S P PG
Sbjct: 177 PSGGPPGPFGPSGAPPSGGPPGPFNPSEAPPSGGPTGPFDPSGAPPSGGP-PG 228
Score = 27.9 bits (59), Expect = 9.5
Identities = 17/53 (32%), Positives = 18/53 (33%)
Frame = +2
Query: 416 PXPXPPGXGXXDXXPXSXXXPGPXVPTLXPPXXPXXXPXXXXXXXASSXPXPG 574
P PPG P S PGP P+ PP P S P PG
Sbjct: 222 PSGGPPGPFNPSGAPPSGGPPGPFDPSGAPPSGGPPGPFNPSGAPPSGGP-PG 273
Score = 27.9 bits (59), Expect = 9.5
Identities = 17/53 (32%), Positives = 18/53 (33%)
Frame = +2
Query: 416 PXPXPPGXGXXDXXPXSXXXPGPXVPTLXPPXXPXXXPXXXXXXXASSXPXPG 574
P PPG P S PGP P+ PP P S P PG
Sbjct: 237 PSGGPPGPFDPSGAPPSGGPPGPFNPSGAPPSGGPPGPFDPSGAPPSGGP-PG 288
Score = 27.9 bits (59), Expect = 9.5
Identities = 17/53 (32%), Positives = 18/53 (33%)
Frame = +2
Query: 416 PXPXPPGXGXXDXXPXSXXXPGPXVPTLXPPXXPXXXPXXXXXXXASSXPXPG 574
P PPG P S PGP P+ PP P S P PG
Sbjct: 252 PSGGPPGPFNPSGAPPSGGPPGPFDPSGAPPSGGPPGPFDPSGAPPSGGP-PG 303
Score = 27.9 bits (59), Expect = 9.5
Identities = 17/53 (32%), Positives = 18/53 (33%)
Frame = +2
Query: 416 PXPXPPGXGXXDXXPXSXXXPGPXVPTLXPPXXPXXXPXXXXXXXASSXPXPG 574
P PPG P S PGP P+ PP P S P PG
Sbjct: 267 PSGGPPGPFDPSGAPPSGGPPGPFDPSGAPPSGGPPGPFDPSGAQPSGGP-PG 318
Score = 27.9 bits (59), Expect = 9.5
Identities = 17/53 (32%), Positives = 18/53 (33%)
Frame = +2
Query: 416 PXPXPPGXGXXDXXPXSXXXPGPXVPTLXPPXXPXXXPXXXXXXXASSXPXPG 574
P PPG P S PGP P+ PP P S P PG
Sbjct: 312 PSGGPPGPFNPSGAPPSGGPPGPFDPSGAPPSGGPPGPFNPSGAPPSGGP-PG 363
Score = 27.9 bits (59), Expect = 9.5
Identities = 17/53 (32%), Positives = 18/53 (33%)
Frame = +2
Query: 416 PXPXPPGXGXXDXXPXSXXXPGPXVPTLXPPXXPXXXPXXXXXXXASSXPXPG 574
P PPG P S PGP P+ PP P S P PG
Sbjct: 327 PSGGPPGPFDPSGAPPSGGPPGPFNPSGAPPSGGPPGPFDPSGAPPSGGP-PG 378
Score = 27.9 bits (59), Expect = 9.5
Identities = 17/53 (32%), Positives = 18/53 (33%)
Frame = +2
Query: 416 PXPXPPGXGXXDXXPXSXXXPGPXVPTLXPPXXPXXXPXXXXXXXASSXPXPG 574
P PPG P S PGP P+ PP P S P PG
Sbjct: 342 PSGGPPGPFNPSGAPPSGGPPGPFDPSGAPPSGGPPGPFDPSGAPPSGGP-PG 393
Score = 27.9 bits (59), Expect = 9.5
Identities = 17/53 (32%), Positives = 18/53 (33%)
Frame = +2
Query: 416 PXPXPPGXGXXDXXPXSXXXPGPXVPTLXPPXXPXXXPXXXXXXXASSXPXPG 574
P PPG P S PGP P+ PP P S P PG
Sbjct: 357 PSGGPPGPFDPSGAPPSGGPPGPFDPSGAPPSGGPPGPFDPSGAPPSGGP-PG 408
Score = 27.9 bits (59), Expect = 9.5
Identities = 17/53 (32%), Positives = 18/53 (33%)
Frame = +2
Query: 416 PXPXPPGXGXXDXXPXSXXXPGPXVPTLXPPXXPXXXPXXXXXXXASSXPXPG 574
P PPG P S PGP P+ PP P S P PG
Sbjct: 372 PSGGPPGPFDPSGAPPSGGPPGPFDPSGAPPSGGPPGPFNPSGAPPSGGP-PG 423
Score = 27.9 bits (59), Expect = 9.5
Identities = 17/53 (32%), Positives = 18/53 (33%)
Frame = +2
Query: 416 PXPXPPGXGXXDXXPXSXXXPGPXVPTLXPPXXPXXXPXXXXXXXASSXPXPG 574
P PPG P S PGP P+ PP P S P PG
Sbjct: 387 PSGGPPGPFDPSGAPPSGGPPGPFNPSGAPPSGGPPGPFNPSGAPPSGGP-PG 438
Score = 27.9 bits (59), Expect = 9.5
Identities = 17/53 (32%), Positives = 18/53 (33%)
Frame = +2
Query: 416 PXPXPPGXGXXDXXPXSXXXPGPXVPTLXPPXXPXXXPXXXXXXXASSXPXPG 574
P PPG P S PGP P+ PP P S P PG
Sbjct: 402 PSGGPPGPFNPSGAPPSGGPPGPFNPSGAPPSGGPPGPFNPSGAPPSGGP-PG 453
Score = 27.9 bits (59), Expect = 9.5
Identities = 17/53 (32%), Positives = 18/53 (33%)
Frame = +2
Query: 416 PXPXPPGXGXXDXXPXSXXXPGPXVPTLXPPXXPXXXPXXXXXXXASSXPXPG 574
P PPG P S PGP P+ PP P S P PG
Sbjct: 417 PSGGPPGPFNPSGAPPSGGPPGPFNPSGAPPSGGPPGPFNPSGAPPSGGP-PG 468
Score = 27.9 bits (59), Expect = 9.5
Identities = 17/53 (32%), Positives = 18/53 (33%)
Frame = +2
Query: 416 PXPXPPGXGXXDXXPXSXXXPGPXVPTLXPPXXPXXXPXXXXXXXASSXPXPG 574
P PPG P S PGP P+ PP P S P PG
Sbjct: 432 PSGGPPGPFNPSGAPPSGGPPGPFNPSGAPPSGGPPGPFNPSGAPPSGGP-PG 483
Score = 27.9 bits (59), Expect = 9.5
Identities = 17/53 (32%), Positives = 18/53 (33%)
Frame = +2
Query: 416 PXPXPPGXGXXDXXPXSXXXPGPXVPTLXPPXXPXXXPXXXXXXXASSXPXPG 574
P PPG P S PGP P+ PP P S P PG
Sbjct: 447 PSGGPPGPFNPSGAPPSGGPPGPFNPSGAPPSGGPPGPFDPSGAPPSGGP-PG 498
Score = 27.9 bits (59), Expect = 9.5
Identities = 17/53 (32%), Positives = 18/53 (33%)
Frame = +2
Query: 416 PXPXPPGXGXXDXXPXSXXXPGPXVPTLXPPXXPXXXPXXXXXXXASSXPXPG 574
P PPG P S PGP P+ PP P S P PG
Sbjct: 462 PSGGPPGPFNPSGAPPSGGPPGPFDPSGAPPSGGPPGPFNPSGAPPSGGP-PG 513
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 27.9 bits (59), Expect = 9.5
Identities = 17/59 (28%), Positives = 18/59 (30%), Gaps = 2/59 (3%)
Frame = +2
Query: 422 PXPPGXGXXDXXPXSXXXPG--PXVPTLXPPXXPXXXPXXXXXXXASSXPXPGGXPXXP 592
P PPG P PG P + PP P P PGG P P
Sbjct: 714 PPPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPP 772
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 27.9 bits (59), Expect = 9.5
Identities = 17/59 (28%), Positives = 18/59 (30%), Gaps = 2/59 (3%)
Frame = +2
Query: 422 PXPPGXGXXDXXPXSXXXPG--PXVPTLXPPXXPXXXPXXXXXXXASSXPXPGGXPXXP 592
P PPG P PG P + PP P P PGG P P
Sbjct: 714 PPPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPP 772
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 27.9 bits (59), Expect = 9.5
Identities = 17/59 (28%), Positives = 18/59 (30%), Gaps = 2/59 (3%)
Frame = +2
Query: 422 PXPPGXGXXDXXPXSXXXPG--PXVPTLXPPXXPXXXPXXXXXXXASSXPXPGGXPXXP 592
P PPG P PG P + PP P P PGG P P
Sbjct: 297 PPPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPP 355
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,273,443
Number of Sequences: 27780
Number of extensions: 113111
Number of successful extensions: 335
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 233
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 326
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2087513582
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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