Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP17_T7_J24
         (770 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16A3.13 |meu7|aah4|alpha-amylase homolog Aah4|Schizosaccharo...    27   3.0  
SPAC607.10 |spo3||sporulation protein Spo3|Schizosaccharomyces p...    26   6.9  
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|...    26   6.9  
SPAC26F1.07 |||2-methylbutyraldehyde reductase |Schizosaccharomy...    25   9.1  

>SPBC16A3.13 |meu7|aah4|alpha-amylase homolog
           Aah4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 774

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 11/24 (45%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
 Frame = +1

Query: 367 SRPDHIPRQFPHH-HHGHLPSCVP 435
           ++PDH P +   H HHG  P  VP
Sbjct: 301 TKPDHKPWKHEEHCHHGRFPRPVP 324


>SPAC607.10 |spo3||sporulation protein Spo3|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1028

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 27/95 (28%), Positives = 38/95 (40%), Gaps = 7/95 (7%)
 Frame = +1

Query: 367  SRPDHIPRQFPHHHHGHLPS--CVPTEPGFSTGSSLHPH---LPSSN--CTAERCVARCV 525
            S+   IP   P+  +G      CV T P     S+L PH   L +SN    AE       
Sbjct: 849  SKSGRIPTGSPYIMNGQWRKDLCVSTPPMVDINSALFPHWFKLSASNLFAGAEHAGLNRQ 908

Query: 526  KPCIHRVSTHAVLPQRALHVQFQALVHRQRRXQEP 630
            KP    +  +  LP+ +  V  +  V R  R + P
Sbjct: 909  KPDKIDLDLYEPLPENSYLVAAELRVLRALRHKNP 943


>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
            subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1752

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +1

Query: 421  PSCVPTEPGFSTGSSLHPHLPSSNCTA 501
            PS  P+ PG+ST  +  P  PS + T+
Sbjct: 1556 PSYSPSSPGYSTSPAYMPSSPSYSPTS 1582


>SPAC26F1.07 |||2-methylbutyraldehyde reductase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 321

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
 Frame = +1

Query: 454 TGSSLHPHLPSSNCT-AERCVARC-VKPCIHRVSTHAVLPQ 570
           TG   H  L + N T  ER +    VKP +H++  H  LPQ
Sbjct: 158 TGKVRHIGLSNFNDTNLERILKVAKVKPAVHQMELHPFLPQ 198


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,101,894
Number of Sequences: 5004
Number of extensions: 31519
Number of successful extensions: 65
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 65
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 371330890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)