Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP17_T7_J24
(770 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0779 - 20497718-20498773 35 0.083
05_03_0468 + 14376926-14377183,14377534-14377710,14377802-143778... 32 0.58
04_04_0254 - 23951495-23951902,23952000-23952155,23952344-239524... 31 0.77
04_04_1636 + 34951841-34954322,34954440-34954627,34955737-349558... 30 2.4
04_04_0347 + 24564589-24565296 29 3.1
04_03_1022 - 21778315-21779007 29 3.1
05_03_0423 + 13792424-13792564,13792712-13792944,13793681-137937... 29 4.1
11_06_0176 + 20929629-20929791,20929918-20930333,20930449-209307... 29 5.4
11_01_0732 + 6065852-6066531,6067066-6067141,6067231-6067357,606... 29 5.4
03_02_1040 + 13601779-13602390 29 5.4
01_03_0117 + 12684729-12685886,12685978-12686145,12686292-126863... 29 5.4
01_06_1290 - 36023353-36024096 28 9.5
>10_08_0779 - 20497718-20498773
Length = 351
Score = 34.7 bits (76), Expect = 0.083
Identities = 17/45 (37%), Positives = 25/45 (55%)
Frame = +1
Query: 415 HLPSCVPTEPGFSTGSSLHPHLPSSNCTAERCVARCVKPCIHRVS 549
HL +P+ P +S HPH SS+ ++ + CV P +HRVS
Sbjct: 49 HLSPYLPSLPHLLLAASFHPHPISSSSSSSAASSSCV-PLLHRVS 92
>05_03_0468 +
14376926-14377183,14377534-14377710,14377802-14377867,
14378009-14378134,14378499-14378678,14379015-14379179,
14380185-14380538
Length = 441
Score = 31.9 bits (69), Expect = 0.58
Identities = 11/25 (44%), Positives = 13/25 (52%)
Frame = +1
Query: 370 RPDHIPRQFPHHHHGHLPSCVPTEP 444
+P P HHHH H PS P+ P
Sbjct: 8 QPPQTPPSLDHHHHHHTPSVGPSSP 32
>04_04_0254 -
23951495-23951902,23952000-23952155,23952344-23952485,
23952772-23953160,23953833-23953948,23954290-23954371
Length = 430
Score = 31.5 bits (68), Expect = 0.77
Identities = 15/27 (55%), Positives = 16/27 (59%)
Frame = +1
Query: 388 RQFPHHHHGHLPSCVPTEPGFSTGSSL 468
R P HHHGHL S T GFS+ SL
Sbjct: 312 RHIPEHHHGHLKSVKIT--GFSSAKSL 336
>04_04_1636 +
34951841-34954322,34954440-34954627,34955737-34955838,
34956101-34956177,34956258-34956319,34956504-34956511
Length = 972
Score = 29.9 bits (64), Expect = 2.4
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = +1
Query: 391 QFPHHHHGHLPSCVPTEP 444
Q HH HGHLP+ P +P
Sbjct: 190 QHQHHGHGHLPASFPDQP 207
>04_04_0347 + 24564589-24565296
Length = 235
Score = 29.5 bits (63), Expect = 3.1
Identities = 22/77 (28%), Positives = 30/77 (38%), Gaps = 4/77 (5%)
Frame = +1
Query: 373 PDHIPRQFPHHHHGHLPSCVPTEPGFSTGSSLHPHLPSSNCTAERCVARCVKPC---IHR 543
P H HHHH H T P + S H P+ ++ A P IH
Sbjct: 92 PSHHHHHHGHHHHRH---ATATAPAHAPSSHHDRHAPAPVHSSWPWPAHAPAPAPAVIHG 148
Query: 544 VSTH-AVLPQRALHVQF 591
++H A P + HVQ+
Sbjct: 149 TNSHLAPAPAPSSHVQY 165
>04_03_1022 - 21778315-21779007
Length = 230
Score = 29.5 bits (63), Expect = 3.1
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Frame = +1
Query: 379 HIPRQFPHHHHGHLPSCVP-TEPGFSTGSSLHPHLP 483
+IP PHHHH P+ P T PG G + P+ P
Sbjct: 84 YIPPHHPHHHHPPTPAPAPSTTPGGHGG--VPPYYP 117
>05_03_0423 +
13792424-13792564,13792712-13792944,13793681-13793756,
13794003-13794089,13794500-13794553,13794654-13794695,
13794818-13794896,13795059-13795129,13795235-13795297
Length = 281
Score = 29.1 bits (62), Expect = 4.1
Identities = 26/89 (29%), Positives = 40/89 (44%)
Frame = +2
Query: 368 VGQIIFLVSFLIITTVTFLLAFQQNQVFPLAQVFTLTCLPQIVLRSGALRVA*SLVFIEC 547
+G +VS L+ ++ +++ + P Q CL I S V +VF
Sbjct: 183 LGASFVIVSILVNPSIRSIVS---KRAGPFEQGMVQGCLTGI---SSTANVISPIVF--S 234
Query: 548 QLTRFFLSGHCTFSFRHLSIASAGLRSLL 634
LT +FLS F+FR S+A AG L+
Sbjct: 235 PLTAWFLSETAPFNFRGFSLACAGFAMLI 263
>11_06_0176 +
20929629-20929791,20929918-20930333,20930449-20930736,
20931034-20931147,20931245-20931352,20931701-20931744,
20933106-20933200,20934103-20934182,20934278-20934391,
20934476-20934628,20934740-20934832
Length = 555
Score = 28.7 bits (61), Expect = 5.4
Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
Frame = +1
Query: 421 PSCVPTEP--GFSTGSSLHPHLPSSNCTAERCVARCVKPCIHRVSTHAVLPQRA 576
P C+ T G S +S L S +AR + P IH +S LP++A
Sbjct: 56 PDCIETTTAHGESLSASKEYSLAESQFNRALSIARPLDPAIHNISYGVSLPEKA 109
>11_01_0732 +
6065852-6066531,6067066-6067141,6067231-6067357,
6068084-6068289
Length = 362
Score = 28.7 bits (61), Expect = 5.4
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = +1
Query: 340 ASGDPRAVDSRPDHIPRQFPHHHHGH 417
A+ P A D P P+ PHH HGH
Sbjct: 23 AAAGPYAGDHGPIARPQGAPHHRHGH 48
>03_02_1040 + 13601779-13602390
Length = 203
Score = 28.7 bits (61), Expect = 5.4
Identities = 11/35 (31%), Positives = 15/35 (42%)
Frame = +1
Query: 370 RPDHIPRQFPHHHHGHLPSCVPTEPGFSTGSSLHP 474
+P H+ R +HHH H P F+ HP
Sbjct: 15 KPRHLSRSLTYHHHHHPYQGQGRSPSFNARRQHHP 49
>01_03_0117 +
12684729-12685886,12685978-12686145,12686292-12686336,
12686438-12687280
Length = 737
Score = 28.7 bits (61), Expect = 5.4
Identities = 14/30 (46%), Positives = 15/30 (50%), Gaps = 2/30 (6%)
Frame = +1
Query: 403 HHHGHLPSCVPTEPGFSTGSSLHP--HLPS 486
HHH PS P EP + S HP H PS
Sbjct: 187 HHHAKPPSLPPAEPPVPSPSPEHPPRHSPS 216
>01_06_1290 - 36023353-36024096
Length = 247
Score = 27.9 bits (59), Expect = 9.5
Identities = 13/45 (28%), Positives = 17/45 (37%)
Frame = +1
Query: 400 HHHHGHLPSCVPTEPGFSTGSSLHPHLPSSNCTAERCVARCVKPC 534
HH + V GF+ G S+ PH NC C + C
Sbjct: 121 HHGNDQTSYGVSVVDGFNVGLSVTPHEGRGNCPVLACRKNLTETC 165
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,768,332
Number of Sequences: 37544
Number of extensions: 214223
Number of successful extensions: 910
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 828
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 887
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2075009728
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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