Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP17_T7_J24
(770 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U64844-8|AAB18308.1| 330|Caenorhabditis elegans Serpentine rece... 34 0.13
Z68314-7|CAA92662.2| 872|Caenorhabditis elegans Hypothetical pr... 31 1.2
AF016672-7|AAB66119.1| 378|Caenorhabditis elegans Vig (drosophi... 30 1.6
AC025716-10|AAK39607.1| 474|Caenorhabditis elegans Hypothetical... 30 1.6
L16679-1|AAA28092.5| 2104|Caenorhabditis elegans Muscle position... 30 2.1
AF289202-1|AAK69172.1| 2104|Caenorhabditis elegans transmembrane... 30 2.1
AL132951-7|CAD89753.2| 608|Caenorhabditis elegans Hypothetical ... 29 3.7
U39852-7|AAK39260.1| 240|Caenorhabditis elegans Ground-like (gr... 29 4.8
AL110501-9|CAB54507.2| 802|Caenorhabditis elegans Hypothetical ... 28 8.5
AL110485-27|CAB60369.3| 515|Caenorhabditis elegans Hypothetical... 28 8.5
AL033514-40|CAD36501.1| 802|Caenorhabditis elegans Hypothetical... 28 8.5
AJ319870-1|CAC67459.1| 802|Caenorhabditis elegans ZYG-8 protein... 28 8.5
AF036689-1|AAB88320.1| 186|Caenorhabditis elegans Hypothetical ... 28 8.5
AC006776-7|AAF60623.1| 361|Caenorhabditis elegans Serpentine re... 28 8.5
>U64844-8|AAB18308.1| 330|Caenorhabditis elegans Serpentine
receptor, class h protein213 protein.
Length = 330
Score = 33.9 bits (74), Expect = 0.13
Identities = 25/76 (32%), Positives = 36/76 (47%)
Frame = +2
Query: 341 LLATHALWIVGQIIFLVSFLIITTVTFLLAFQQNQVFPLAQVFTLTCLPQIVLRSGALRV 520
L+ T W V + + ++ I+ TV F A+Q LA+ F ++ P I L A
Sbjct: 126 LIPTSKCWRVFRTPWFITHFIVATVFFFPAYQMIPDQQLAKNFVISIAPCIPLYVNA--- 182
Query: 521 A*SLVFIECQLTRFFL 568
LVF+ TRFFL
Sbjct: 183 --DLVFVMLLETRFFL 196
>Z68314-7|CAA92662.2| 872|Caenorhabditis elegans Hypothetical
protein F07H5.8 protein.
Length = 872
Score = 30.7 bits (66), Expect = 1.2
Identities = 12/50 (24%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Frame = +1
Query: 427 CVPTEPGFSTGSSLHPHLPSSNCTAERCVARCVKPCIHR-VSTHAVLPQR 573
CV +P FS ++ PS++ ++ +C+ +C C + + T+ + Q+
Sbjct: 494 CVAAQPNFSVQINMIDETPSTSTSSPQCIPQCQPSCDQQCIQTYKIQVQQ 543
>AF016672-7|AAB66119.1| 378|Caenorhabditis elegans Vig (drosophila
vasa intronic gene)ortholog protein 1, isoform a
protein.
Length = 378
Score = 30.3 bits (65), Expect = 1.6
Identities = 15/26 (57%), Positives = 18/26 (69%)
Frame = -2
Query: 547 TLDEYKALRNAQRTAPQYNLRKAGEG 470
TL E+KA A AP++N RKAGEG
Sbjct: 254 TLKEFKAAAKAD--APKFNTRKAGEG 277
>AC025716-10|AAK39607.1| 474|Caenorhabditis elegans Hypothetical
protein Y39G10AR.7 protein.
Length = 474
Score = 30.3 bits (65), Expect = 1.6
Identities = 16/49 (32%), Positives = 18/49 (36%)
Frame = +1
Query: 328 CPTNASGDPRAVDSRPDHIPRQFPHHHHGHLPSCVPTEPGFSTGSSLHP 474
CP +S P I F H H PSC+PT G L P
Sbjct: 91 CPKPSSESAFPFPISPTQIDLPFGHTAHDRKPSCLPTPRGSPNSPRLTP 139
>L16679-1|AAA28092.5| 2104|Caenorhabditis elegans Muscle positioning
protein 4 protein.
Length = 2104
Score = 29.9 bits (64), Expect = 2.1
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +1
Query: 466 LHPHLPSSNCTAERCVARCVKPCIHRVSTHA 558
L+P P NC + R V C KP ++ S HA
Sbjct: 1655 LNPSRPGRNCLSYRGVNECEKPELNECSPHA 1685
>AF289202-1|AAK69172.1| 2104|Caenorhabditis elegans transmembrane
matrix receptor MUP-4 protein.
Length = 2104
Score = 29.9 bits (64), Expect = 2.1
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +1
Query: 466 LHPHLPSSNCTAERCVARCVKPCIHRVSTHA 558
L+P P NC + R V C KP ++ S HA
Sbjct: 1655 LNPSRPGRNCLSYRGVNECEKPELNECSPHA 1685
>AL132951-7|CAD89753.2| 608|Caenorhabditis elegans Hypothetical
protein Y67H2A.10 protein.
Length = 608
Score = 29.1 bits (62), Expect = 3.7
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +1
Query: 358 AVDSRPDHIPRQFPHHHHGHLPSCVPTEPGFSTGS 462
A+ H Q HHHH +P+ P EP S+G+
Sbjct: 203 ALQQAMQHQQIQQQHHHHQQIPTSAP-EPSVSSGT 236
>U39852-7|AAK39260.1| 240|Caenorhabditis elegans Ground-like (grd
related) protein 6 protein.
Length = 240
Score = 28.7 bits (61), Expect = 4.8
Identities = 17/71 (23%), Positives = 28/71 (39%), Gaps = 1/71 (1%)
Frame = +1
Query: 370 RPDHIPRQFPHHHHGHLPSCVPTEPGFSTGSSLHPHLPSSNCTAER-CVARCVKPCIHRV 546
RP P P ++ +P +PT G G+ +PS A+ C C PC ++
Sbjct: 99 RPSFYPSYVPQYYQPMMPQPMPTAGGCGGGAV----VPSVRIPAQNDCCCGCSSPCKYKS 154
Query: 547 STHAVLPQRAL 579
A + +
Sbjct: 155 VRRAAFAAKTI 165
>AL110501-9|CAB54507.2| 802|Caenorhabditis elegans Hypothetical
protein Y79H2A.11 protein.
Length = 802
Score = 27.9 bits (59), Expect = 8.5
Identities = 12/42 (28%), Positives = 22/42 (52%)
Frame = +1
Query: 331 PTNASGDPRAVDSRPDHIPRQFPHHHHGHLPSCVPTEPGFST 456
P++++ + R H+P+Q HHH H + V +E +T
Sbjct: 90 PSSSAPSTSSAHRRFSHLPQQHFHHHIHHNQTAVISEETLTT 131
>AL110485-27|CAB60369.3| 515|Caenorhabditis elegans Hypothetical
protein Y46G5A.26a protein.
Length = 515
Score = 27.9 bits (59), Expect = 8.5
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = +2
Query: 356 ALWIVGQIIFLVSFLIITTVTFLLAFQQNQVFP 454
+LW+ + F II T+TFLL F N+V P
Sbjct: 307 SLWMENETSFQDMISIILTITFLL-FSYNEVMP 338
>AL033514-40|CAD36501.1| 802|Caenorhabditis elegans Hypothetical
protein Y79H2A.11 protein.
Length = 802
Score = 27.9 bits (59), Expect = 8.5
Identities = 12/42 (28%), Positives = 22/42 (52%)
Frame = +1
Query: 331 PTNASGDPRAVDSRPDHIPRQFPHHHHGHLPSCVPTEPGFST 456
P++++ + R H+P+Q HHH H + V +E +T
Sbjct: 90 PSSSAPSTSSAHRRFSHLPQQHFHHHIHHNQTAVISEETLTT 131
>AJ319870-1|CAC67459.1| 802|Caenorhabditis elegans ZYG-8 protein
protein.
Length = 802
Score = 27.9 bits (59), Expect = 8.5
Identities = 12/42 (28%), Positives = 22/42 (52%)
Frame = +1
Query: 331 PTNASGDPRAVDSRPDHIPRQFPHHHHGHLPSCVPTEPGFST 456
P++++ + R H+P+Q HHH H + V +E +T
Sbjct: 90 PSSSAPSTSSAHRRFSHLPQQHFHHHIHHNQTAVISEETLTT 131
>AF036689-1|AAB88320.1| 186|Caenorhabditis elegans Hypothetical
protein C50A2.3 protein.
Length = 186
Score = 27.9 bits (59), Expect = 8.5
Identities = 14/43 (32%), Positives = 19/43 (44%)
Frame = +1
Query: 367 SRPDHIPRQFPHHHHGHLPSCVPTEPGFSTGSSLHPHLPSSNC 495
+RP + RQF + HH P+ P + LPSS C
Sbjct: 119 ARPMSMNRQFQNQHHLSTPTVQPLNIQYLYPPRYEATLPSSEC 161
>AC006776-7|AAF60623.1| 361|Caenorhabditis elegans Serpentine
receptor, class w protein100 protein.
Length = 361
Score = 27.9 bits (59), Expect = 8.5
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +2
Query: 362 WIVGQIIFLVSFLIITTVTFLLAFQQNQVFPLAQV 466
W++ I+F +S L+ F +N+ FPL QV
Sbjct: 146 WLMAVILFFLSALLSVFYQFRFVVIENRSFPLPQV 180
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,812,094
Number of Sequences: 27780
Number of extensions: 187272
Number of successful extensions: 708
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 615
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 702
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1851132448
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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