Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP17_T7_J20
         (784 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      23   4.2  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    23   4.2  
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    21   9.8  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    21   9.8  

>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = -1

Query: 202 SYAFGAREPDDDWRSFL 152
           SYAF     +DDW S L
Sbjct: 350 SYAFSVWRMEDDWNSNL 366


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 9/30 (30%), Positives = 15/30 (50%)
 Frame = -1

Query: 190 GAREPDDDWRSFLIGNARSFRQALLAYRQH 101
           G R+P ++W S   G+A  + +    Y  H
Sbjct: 156 GTRQPPNNWLSVFWGSAWQWNEERKQYYLH 185


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = -3

Query: 41  PSLRVPSFLCT 9
           P +R PSF CT
Sbjct: 113 PGMRAPSFRCT 123


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = -3

Query: 41  PSLRVPSFLCT 9
           P +R PSF CT
Sbjct: 113 PGMRAPSFRCT 123


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 213,693
Number of Sequences: 438
Number of extensions: 5669
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24639531
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)