Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP17_T7_J19
         (778 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    29   0.56 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    29   0.74 
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    26   6.9  
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p...    25   9.2  

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 29.5 bits (63), Expect = 0.56
 Identities = 17/54 (31%), Positives = 18/54 (33%)
 Frame = +2

Query: 356 PXPXXXPPXXPXPSXSSXPPXLXPXXXXXXPPXPPXSXPXXXXXXGPXXXXPXP 517
           P P   PP  P     S PP L P      PP PP +        G     P P
Sbjct: 418 PTPPSLPPSAPPSLPPSAPPSL-PMGAPAAPPLPPSAPIAPPLPAGMPAAPPLP 470



 Score = 28.3 bits (60), Expect = 1.3
 Identities = 12/33 (36%), Positives = 13/33 (39%)
 Frame = +2

Query: 374 PPXXPXPSXSSXPPXLXPXXXXXXPPXPPXSXP 472
           PP    PS    PP L        PP PP + P
Sbjct: 364 PPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIP 396



 Score = 26.2 bits (55), Expect = 5.2
 Identities = 12/33 (36%), Positives = 14/33 (42%)
 Frame = +2

Query: 374 PPXXPXPSXSSXPPXLXPXXXXXXPPXPPXSXP 472
           PP  P  S ++    L P      PP PP S P
Sbjct: 338 PPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAP 370



 Score = 25.8 bits (54), Expect = 6.9
 Identities = 11/33 (33%), Positives = 12/33 (36%)
 Frame = +2

Query: 362 PXXXPPXXPXPSXSSXPPXLXPXXXXXXPPXPP 460
           P   PP  P  +  S PP   P      P  PP
Sbjct: 416 PVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPP 448


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 29.1 bits (62), Expect = 0.74
 Identities = 15/54 (27%), Positives = 15/54 (27%)
 Frame = +2

Query: 356 PXPXXXPPXXPXPSXSSXPPXLXPXXXXXXPPXPPXSXPXXXXXXGPXXXXPXP 517
           P P   P   P P     PP   P       P PP   P      G     P P
Sbjct: 744 PAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAGGSRYYAPAP 797


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 12/37 (32%), Positives = 12/37 (32%)
 Frame = +2

Query: 362  PXXXPPXXPXPSXSSXPPXLXPXXXXXXPPXPPXSXP 472
            P    P  P P  S  PP   P      P  PP   P
Sbjct: 1700 PQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLP 1736


>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 517

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = -3

Query: 320 LRSLISNLXNTCDLTPLPEWSCEQSAW 240
           +RS+   L    D+TP+ +W  ++S W
Sbjct: 109 VRSIEQELEQLRDVTPINQWKRKRSLW 135


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,183,662
Number of Sequences: 5004
Number of extensions: 12496
Number of successful extensions: 59
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 54
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 375345278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)