Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP17_T7_J18
         (1275 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    26   0.81 
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S...    25   1.5  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    28   3.2  

>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 25.8 bits (54), Expect(2) = 0.81
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = +3

Query: 843 GXPPPPPPP 869
           G PPPPPPP
Sbjct: 7   GNPPPPPPP 15



 Score = 23.8 bits (49), Expect(2) = 3.7
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +3

Query: 849 PPPPPPP 869
           PPPPPPP
Sbjct: 24  PPPPPPP 30



 Score = 22.2 bits (45), Expect(2) = 0.81
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +3

Query: 852 PPPPPPXXXF 881
           PPPPPP   F
Sbjct: 9   PPPPPPPPGF 18



 Score = 21.8 bits (44), Expect(2) = 3.7
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +3

Query: 837 GXGXPPPPPP 866
           G   PPPPPP
Sbjct: 7   GNPPPPPPPP 16


>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
           Cap1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 551

 Score = 24.6 bits (51), Expect(2) = 1.5
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = +1

Query: 835 GGXXXPPPPPP 867
           GG   PPPPPP
Sbjct: 303 GGLPPPPPPPP 313



 Score = 22.6 bits (46), Expect(2) = 1.5
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = +1

Query: 850 PPPPPPXXXFF 882
           PPPPPP   F+
Sbjct: 309 PPPPPPSNDFW 319


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 27.9 bits (59), Expect = 3.2
 Identities = 9/11 (81%), Positives = 9/11 (81%)
 Frame = +3

Query: 837 GXGXPPPPPPP 869
           G G PPPPPPP
Sbjct: 772 GAGPPPPPPPP 782



 Score = 23.8 bits (49), Expect(2) = 3.9
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +3

Query: 849 PPPPPPP 869
           PPPPPPP
Sbjct: 777 PPPPPPP 783



 Score = 21.8 bits (44), Expect(2) = 3.9
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +3

Query: 837 GXGXPPPPPP 866
           G   PPPPPP
Sbjct: 759 GGPPPPPPPP 768


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,513,696
Number of Sequences: 5004
Number of extensions: 16896
Number of successful extensions: 179
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 68
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 693525122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)