Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP17_T7_J18
         (1275 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0080 + 587674-588510                                             26   0.89 
01_06_1670 - 39007402-39008229,39008320-39008567,39009159-390093...    26   1.4  
04_03_0690 + 18751601-18753667                                         25   1.4  
04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076           29   7.8  

>07_01_0080 + 587674-588510
          Length = 278

 Score = 25.8 bits (54), Expect(2) = 0.89
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = +3

Query: 843 GXPPPPPPP 869
           G PPPPPPP
Sbjct: 102 GSPPPPPPP 110



 Score = 25.0 bits (52), Expect(2) = 0.89
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = +3

Query: 849 PPPPPPPXXXF 881
           PPPPPPP   F
Sbjct: 113 PPPPPPPPPLF 123


>01_06_1670 -
           39007402-39008229,39008320-39008567,39009159-39009364,
           39009454-39011054
          Length = 960

 Score = 25.8 bits (54), Expect(2) = 1.4
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = +3

Query: 843 GXPPPPPPP 869
           G PPPPPPP
Sbjct: 421 GPPPPPPPP 429



 Score = 24.2 bits (50), Expect(2) = 1.4
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +3

Query: 849 PPPPPPPXXXFXXXXKK 899
           PPPPPPP   +    +K
Sbjct: 427 PPPPPPPVGYWESRVRK 443


>04_03_0690 + 18751601-18753667
          Length = 688

 Score = 25.0 bits (52), Expect(2) = 1.4
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = +3

Query: 825 LXXXGXGXPPPPPPP 869
           L   G G  PPPPPP
Sbjct: 77  LPSSGAGPTPPPPPP 91



 Score = 25.0 bits (52), Expect(2) = 1.4
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = +3

Query: 849 PPPPPPPXXXF 881
           PPPPPPP   F
Sbjct: 86  PPPPPPPRGAF 96


>04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076
          Length = 906

 Score = 29.1 bits (62), Expect = 7.8
 Identities = 19/70 (27%), Positives = 19/70 (27%), Gaps = 2/70 (2%)
 Frame = +1

Query: 838  GXXXPPPPP--PXXXFFXXXXKKXXXXXXGXGXXXPPXXXXXXXXXXXXXXXXPPPPPXX 1011
            G   PPPPP  P                 G G   PP                PPPPP  
Sbjct: 317  GTGAPPPPPAHPAAPAPPPPAPSPSAAGAGSGPPPPPPPAAPAAPRPPGPGPGPPPPPGA 376

Query: 1012 XXFXGXXXPP 1041
                G   PP
Sbjct: 377  AGRGGGGPPP 386


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,615,203
Number of Sequences: 37544
Number of extensions: 430756
Number of successful extensions: 13620
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2749
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7451
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 3957481680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)