Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP17_T7_J17
(1018 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 38 0.002
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 35 0.021
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 31 0.34
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 27 0.63
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S... 29 0.79
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1... 29 0.79
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2... 27 5.6
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces... 27 5.6
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 38.3 bits (85), Expect = 0.002
Identities = 16/36 (44%), Positives = 16/36 (44%)
Frame = -3
Query: 959 KKXPPPPPPXXXXXXGXXXXXXXXXXXPPPPPPPPP 852
KK PPPPPP G PPPPPPP
Sbjct: 308 KKRPPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPP 343
Score = 33.5 bits (73), Expect = 0.049
Identities = 13/30 (43%), Positives = 13/30 (43%)
Frame = -3
Query: 950 PPPPPPXXXXXXGXXXXXXXXXXXPPPPPP 861
PPPPPP G PPPPPP
Sbjct: 337 PPPPPPPRSNAAGSIPLPPQGRSAPPPPPP 366
Score = 26.2 bits (55), Expect = 7.4
Identities = 11/36 (30%), Positives = 12/36 (33%)
Frame = -2
Query: 960 KKXPPPPPPXXXXXXXXXXXXXXXXXXXPPPPPPPP 853
+ PPPPPP PP PPP
Sbjct: 358 RSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPP 393
Score = 25.8 bits (54), Expect = 9.8
Identities = 14/42 (33%), Positives = 14/42 (33%)
Frame = -1
Query: 949 PPPPPPXXXXXXXXXXXXXXXXXXPPPPPPPPXXXXGXXXXG 824
PP PPP PPPPPPP G G
Sbjct: 290 PPLPPPSSRVSAAALAANKKR---PPPPPPPSRRNRGKPPIG 328
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 34.7 bits (76), Expect = 0.021
Identities = 17/43 (39%), Positives = 17/43 (39%), Gaps = 4/43 (9%)
Frame = -3
Query: 956 KXPPPPPPXXXXXXGXXXXXXXXXXXP----PPPPPPPPXXXG 840
K PPPPPP P PPPPPPPP G
Sbjct: 730 KSPPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAG 772
Score = 33.9 bits (74), Expect = 0.037
Identities = 16/33 (48%), Positives = 16/33 (48%)
Frame = -3
Query: 950 PPPPPPXXXXXXGXXXXXXXXXXXPPPPPPPPP 852
PPPPPP G PPPPPPPPP
Sbjct: 762 PPPPPPPGVAGAG-----------PPPPPPPPP 783
Score = 29.9 bits (64), Expect = 0.60
Identities = 15/37 (40%), Positives = 15/37 (40%)
Frame = -1
Query: 949 PPPPPPXXXXXXXXXXXXXXXXXXPPPPPPPPXXXXG 839
PPPPPP PPPPPPPP G
Sbjct: 761 PPPPPPPPGVAGAGP---------PPPPPPPPAVSAG 788
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 30.7 bits (66), Expect = 0.34
Identities = 12/31 (38%), Positives = 12/31 (38%)
Frame = -3
Query: 944 PPPPXXXXXXGXXXXXXXXXXXPPPPPPPPP 852
PPP PPPPPPPPP
Sbjct: 167 PPPSFQPPSAAAPATSLPSDYNPPPPPPPPP 197
Score = 26.2 bits (55), Expect(2) = 1.1
Identities = 8/9 (88%), Positives = 8/9 (88%)
Frame = -3
Query: 878 PPPPPPPPP 852
P PPPPPPP
Sbjct: 236 PAPPPPPPP 244
Score = 21.0 bits (42), Expect(2) = 1.1
Identities = 6/6 (100%), Positives = 6/6 (100%)
Frame = -3
Query: 950 PPPPPP 933
PPPPPP
Sbjct: 192 PPPPPP 197
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 26.6 bits (56), Expect(2) = 0.63
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -3
Query: 878 PPPPPPPP 855
PPPPPPPP
Sbjct: 9 PPPPPPPP 16
Score = 26.6 bits (56), Expect = 5.6
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -3
Query: 875 PPPPPPPP 852
PPPPPPPP
Sbjct: 9 PPPPPPPP 16
Score = 26.2 bits (55), Expect = 7.4
Identities = 13/31 (41%), Positives = 13/31 (41%)
Frame = -3
Query: 950 PPPPPPXXXXXXGXXXXXXXXXXXPPPPPPP 858
PPPPPP PPPPPPP
Sbjct: 9 PPPPPP---------PPGFEPPSQPPPPPPP 30
Score = 26.2 bits (55), Expect = 7.4
Identities = 13/31 (41%), Positives = 13/31 (41%)
Frame = -1
Query: 949 PPPPPPXXXXXXXXXXXXXXXXXXPPPPPPP 857
PPPPPP PPPPPPP
Sbjct: 9 PPPPPPPPGFEPPSQ---------PPPPPPP 30
Score = 21.4 bits (43), Expect(2) = 0.63
Identities = 7/12 (58%), Positives = 7/12 (58%)
Frame = -3
Query: 875 PPPPPPPPXXXG 840
PP PPPP G
Sbjct: 20 PPSQPPPPPPPG 31
>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
Cap1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 551
Score = 29.5 bits (63), Expect = 0.79
Identities = 9/9 (100%), Positives = 9/9 (100%)
Frame = -3
Query: 878 PPPPPPPPP 852
PPPPPPPPP
Sbjct: 306 PPPPPPPPP 314
>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1841
Score = 29.5 bits (63), Expect = 0.79
Identities = 9/9 (100%), Positives = 9/9 (100%)
Frame = -3
Query: 878 PPPPPPPPP 852
PPPPPPPPP
Sbjct: 945 PPPPPPPPP 953
>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1217
Score = 26.6 bits (56), Expect = 5.6
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -3
Query: 878 PPPPPPPP 855
PPPPPPPP
Sbjct: 1095 PPPPPPPP 1102
Score = 26.6 bits (56), Expect = 5.6
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -1
Query: 877 PPPPPPPP 854
PPPPPPPP
Sbjct: 1095 PPPPPPPP 1102
>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 713
Score = 26.6 bits (56), Expect = 5.6
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -3
Query: 878 PPPPPPPP 855
PPPPPPPP
Sbjct: 370 PPPPPPPP 377
Score = 26.6 bits (56), Expect = 5.6
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -1
Query: 877 PPPPPPPP 854
PPPPPPPP
Sbjct: 370 PPPPPPPP 377
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,201,245
Number of Sequences: 5004
Number of extensions: 34529
Number of successful extensions: 515
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 173
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 529254290
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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