Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP17_T7_J15
(1114 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 29 0.88
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 29 1.2
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 28 2.0
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 27 3.6
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 26 8.2
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 26 8.2
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 29.5 bits (63), Expect = 0.88
Identities = 18/50 (36%), Positives = 18/50 (36%), Gaps = 1/50 (2%)
Frame = +2
Query: 950 PXXPAXXXHPKXRSXPHXXXPPXQXPXPAXPP-PXPPPXXCXXXPXXPXP 1096
P A P S P PP P PA PP PPP P P P
Sbjct: 1700 PQMSAPTPPPPPMSVP---PPPSAPPMPAGPPSAPPPPLPASSAPSVPNP 1746
Score = 27.9 bits (59), Expect = 2.7
Identities = 12/26 (46%), Positives = 13/26 (50%)
Frame = +3
Query: 792 PXPXXXXXXPPTXXPXPAGPXPXGPP 869
P P PP+ P PAGP P PP
Sbjct: 1708 PPPPMSVPPPPSAPPMPAGP-PSAPP 1732
Score = 27.1 bits (57), Expect = 4.7
Identities = 15/42 (35%), Positives = 15/42 (35%), Gaps = 3/42 (7%)
Frame = +2
Query: 995 PHXXXPPXQXPXPAXPPP---XPPPXXCXXXPXXPXPXXXPP 1111
P PP Q P PPP PPP P P PP
Sbjct: 1694 PQSAAPP-QMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPP 1734
Score = 26.6 bits (56), Expect = 6.2
Identities = 10/27 (37%), Positives = 13/27 (48%)
Frame = +1
Query: 940 PXIARPTRPXXPPXXPXPPTXXXPPXP 1020
P ++ P P PP PP+ PP P
Sbjct: 1710 PPMSVPPPPSAPPMPAGPPSAPPPPLP 1736
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 29.1 bits (62), Expect = 1.2
Identities = 15/49 (30%), Positives = 15/49 (30%)
Frame = +1
Query: 964 PXXPPXXPXPPTXXXPPXPXXPXRXTPXXPXXXXLXXXAPEXXPPXXXP 1110
P PP P PP TP P L AP PP P
Sbjct: 389 PAPPPAIPGRSAPALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPP 437
Score = 27.1 bits (57), Expect = 4.7
Identities = 24/107 (22%), Positives = 29/107 (27%), Gaps = 3/107 (2%)
Frame = +2
Query: 779 SXXXPPPXPXXXVXAXXPXPPR-RXQXXXPPXXTVXXXXXXRXXXXQXLXXXXXXLQSPX 955
S PPP P P PP+ R PP + P
Sbjct: 335 SLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPA 394
Query: 956 XP--AXXXHPKXRSXPHXXXPPXQXPXPAXPPPXPPPXXCXXXPXXP 1090
P + P + PP P P+ PP PP P P
Sbjct: 395 IPGRSAPALPPLGNASRTSTPPVPTP-PSLPPSAPPSLPPSAPPSLP 440
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 28.3 bits (60), Expect = 2.0
Identities = 15/52 (28%), Positives = 17/52 (32%)
Frame = +2
Query: 941 LQSPXXPAXXXHPKXRSXPHXXXPPXQXPXPAXPPPXPPPXXCXXXPXXPXP 1096
L+SP P + PP PPP PPP P P P
Sbjct: 729 LKSPPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPP 780
Score = 27.9 bits (59), Expect = 2.7
Identities = 16/53 (30%), Positives = 16/53 (30%)
Frame = +2
Query: 950 PXXPAXXXHPKXRSXPHXXXPPXQXPXPAXPPPXPPPXXCXXXPXXPXPXXXP 1108
P P P P PP P PPP PPP P P P
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPA--PIMGGPPPPPPPPGVAGAGPPPPPPPPP 783
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 27.5 bits (58), Expect = 3.6
Identities = 10/22 (45%), Positives = 11/22 (50%)
Frame = +2
Query: 995 PHXXXPPXQXPXPAXPPPXPPP 1060
P PP P+ PPP PPP
Sbjct: 9 PPPPPPPPGFEPPSQPPPPPPP 30
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 26.2 bits (55), Expect = 8.2
Identities = 10/21 (47%), Positives = 10/21 (47%)
Frame = +2
Query: 995 PHXXXPPXQXPXPAXPPPXPP 1057
P P P PA PPP PP
Sbjct: 224 PPTYTPKQADPLPAPPPPPPP 244
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||Manual
Length = 309
Score = 26.2 bits (55), Expect = 8.2
Identities = 19/77 (24%), Positives = 20/77 (25%), Gaps = 9/77 (11%)
Frame = +1
Query: 907 PGPXXXXXXXXPXIARPTRPXXPPXXP---------XPPTXXXPPXPXXPXRXTPXXPXX 1059
P P P + P RP PP P PP P P P P
Sbjct: 128 PAPPTPQSELRPPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSA 187
Query: 1060 XXLXXXAPEXXPPXXXP 1110
L P P P
Sbjct: 188 PSLPSAVPPMPPKVPPP 204
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,148,238
Number of Sequences: 5004
Number of extensions: 26440
Number of successful extensions: 176
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 589685872
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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