Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP17_T7_J13
         (828 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0615 + 4523202-4524518                                           30   2.0  
03_06_0187 + 32209924-32210634                                         29   3.4  
07_01_0004 + 35300-35533,35617-35732,39044-39287,39451-40578,406...    29   4.5  
02_05_0040 + 25341418-25341810                                         29   4.5  
07_03_0658 - 20366559-20367562,20367745-20367937                       29   6.0  
06_01_0464 - 3300356-3300673,3300757-3301244,3301315-3302137           29   6.0  

>03_01_0615 + 4523202-4524518
          Length = 438

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = +3

Query: 30  VRVSLG-PSRDTLVAAATCSSSTWCHCA 110
           VR  LG PS+  L+A  T + +TW HC+
Sbjct: 81  VRAGLGSPSQQLLLALDTSADATWAHCS 108


>03_06_0187 + 32209924-32210634
          Length = 236

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 14/25 (56%), Positives = 16/25 (64%)
 Frame = +3

Query: 726 PTVHALPPICVNGGGXVTTFWKVPL 800
           PTV  +P + VN GG V T  KVPL
Sbjct: 149 PTVPGVPELPVNPGGVVPTIPKVPL 173


>07_01_0004 +
           35300-35533,35617-35732,39044-39287,39451-40578,
           40657-40833
          Length = 632

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = -2

Query: 539 YRTSLYKKAGWYRSGIPRALCDIHCAGADSLSLISWW 429
           Y+TSL  + G ++ G+PR  C    AG D L     W
Sbjct: 285 YQTSLSPRCGAFKDGVPRMSC-AKIAGRDKLKRRGDW 320


>02_05_0040 + 25341418-25341810
          Length = 130

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 15/33 (45%), Positives = 17/33 (51%)
 Frame = +3

Query: 117 RRAAPA*SCGHSRSEMSASRRRLSAPNAYDSPP 215
           RRAAP   CG S+   S  +RR  AP    S P
Sbjct: 74  RRAAPRRRCGGSKRRCSGPQRRRGAPRRRCSGP 106


>07_03_0658 - 20366559-20367562,20367745-20367937
          Length = 398

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 16/56 (28%), Positives = 23/56 (41%)
 Frame = +1

Query: 172 VVVGSRHRMRMILRQHGFGQCVEQRPLVPEVPVKRRLLNPQPFRQFACRQTVYADL 339
           V+ G+ H + M L +HG    V  + L+P        L    FRQ       + DL
Sbjct: 251 VIPGTEHALNMRLTEHGLDGHVSIKDLIPLAAANADELLSDAFRQLGLAGVEWNDL 306


>06_01_0464 - 3300356-3300673,3300757-3301244,3301315-3302137
          Length = 542

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = -2

Query: 602 AGRITISHRKQL*P-LGLFR*HYRTSLYKKAGWY 504
           AG + +SH   + P L +FR  ++  L+K  GWY
Sbjct: 130 AGFLVLSHHAGVPPSLAVFRHFFKLCLFKSNGWY 163


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,428,330
Number of Sequences: 37544
Number of extensions: 506858
Number of successful extensions: 1402
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1339
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1401
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2279943096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)