Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP17_T7_J12
         (748 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces p...    27   2.8  
SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin homolog|Sc...    26   5.0  
SPAC4F8.14c |hcs1|hcs|3-hydroxy-3-methylglutaryl-CoA synthase|Sc...    26   6.6  
SPBC354.13 |rga6||GTPase activating protein Rga6|Schizosaccharom...    26   6.6  
SPAC19G12.05 |||mitochondrial citrate transporter|Schizosaccharo...    25   8.7  
SPCC613.12c |raf1|dos1, cmc1, clr8|Rik1-associated factor Raf1|S...    25   8.7  

>SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 275

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 30/87 (34%), Positives = 39/87 (44%), Gaps = 3/87 (3%)
 Frame = +3

Query: 180 RSQSGVRTRSE*GG--SRGQHYNQTRGATPRTPDRRVVEAIVDDQRRRSPRYGGPTRSP- 350
           R + G R   + G   SR    ++ R  +P   +R        D+R  SPRY   +RSP 
Sbjct: 99  RRERGGRVHGDSGRLRSRSPSPHEARSRSPYNDER-------SDRRSMSPRYRSRSRSPD 151

Query: 351 GRCRWCSGIPRWARTSLPGRNAIHRRP 431
           GR R     P + R S P RN  HR P
Sbjct: 152 GRSR----SPDYDRRS-PKRN--HRSP 171


>SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin
           homolog|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 997

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = +1

Query: 484 PHRSPQPPTRRPVLLVPARXSDGSVRRS 567
           P R+PQ PT +PVLL   R  + S ++S
Sbjct: 272 PTRAPQSPT-KPVLLTAPRRKNKSPKKS 298


>SPAC4F8.14c |hcs1|hcs|3-hydroxy-3-methylglutaryl-CoA
           synthase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 447

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -3

Query: 269 RPRGGAACLVVVLTAGTPLL*TGSDPGLR 183
           RP GGA C+ +++    P++    +PGLR
Sbjct: 158 RPTGGAGCVALLVGPNAPIV---FEPGLR 183


>SPBC354.13 |rga6||GTPase activating protein
           Rga6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 733

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
 Frame = +3

Query: 306 QRRRSPRYGGPTRSPGRCRWCSGIPRWARTSLPGRNA--IHRR 428
           QR+ +     P RSP +  W S + R + T  P R +  +HRR
Sbjct: 232 QRQFNASQDSPKRSPSKGSWSSILRRPSLTYSPKRQSTGLHRR 274


>SPAC19G12.05 |||mitochondrial citrate
           transporter|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 291

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +3

Query: 267 TPDRRVVEAIVDDQRRRSPRYGG 335
           TP   +  AI+DD++R +PR  G
Sbjct: 123 TPFESIKTAIIDDRKRPNPRLKG 145


>SPCC613.12c |raf1|dos1, cmc1, clr8|Rik1-associated factor
           Raf1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 638

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 16/34 (47%), Positives = 19/34 (55%)
 Frame = +2

Query: 362 LVFRDTPLGQNQPAGSERDTPPTGLLFNSIFGDD 463
           L+   T L  ++P  SER    T LL NSI GDD
Sbjct: 82  LLTSGTFLPNSRPYLSERVRKHTHLLSNSITGDD 115


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,454,437
Number of Sequences: 5004
Number of extensions: 47488
Number of successful extensions: 135
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)