Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP17_T7_J12
(748 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_01_0107 - 1107976-1108033,1108411-1108638,1110109-1110422,111... 32 0.42
02_03_0093 - 15120951-15121344,15121658-15121953,15122119-151224... 32 0.56
07_03_0682 + 20667365-20667655 29 3.0
05_03_0649 - 16566815-16567392,16567491-16567623,16568000-165687... 29 3.0
04_04_1330 - 32700333-32700770 29 3.0
11_06_0610 - 25449085-25453284 29 3.9
04_03_0655 + 18436363-18436901,18436984-18437772,18437952-184380... 29 3.9
04_01_0296 + 3927741-3927960,3928257-3928900 29 5.2
03_02_0511 + 9016215-9016425,9017292-9017365,9018399-9018609,901... 29 5.2
11_02_0059 - 7883980-7884141,7884423-7884467,7884629-7884715,788... 28 6.9
10_01_0030 - 386008-388056,388166-388360,388931-389062,389167-38... 28 6.9
08_02_0154 - 13324384-13325351,13326306-13326502,13326695-133272... 28 6.9
05_07_0104 + 27715123-27715350 28 6.9
05_06_0122 - 25775652-25775936,25776027-25776103,25776177-257762... 28 6.9
12_01_0830 - 7678038-7678444,7678996-7680943,7681231-7681983,768... 28 9.1
09_02_0224 - 5984128-5984923,5985667-5986718,5986800-5987776,598... 28 9.1
08_02_0146 - 13195691-13196658,13197613-13197809,13198002-131984... 28 9.1
08_02_0110 + 12650328-12650552,12650827-12651423,12651480-126518... 28 9.1
08_01_0554 - 4851698-4851943,4852041-4852760 28 9.1
06_03_0332 + 19652207-19652995 28 9.1
>04_01_0107 -
1107976-1108033,1108411-1108638,1110109-1110422,
1110568-1110680,1111740-1111845
Length = 272
Score = 32.3 bits (70), Expect = 0.42
Identities = 28/74 (37%), Positives = 35/74 (47%), Gaps = 10/74 (13%)
Frame = +3
Query: 225 RGQHYNQTRGATPR---TPDRRVVEAIV------DDQRRRSPRYGGPTRSPGRCRWCSGI 377
RG Y+ RG R +P RR V + D R+RSP YG RSP R+ S
Sbjct: 197 RGDRYDGARGGYGRRDDSPYRRSVSPVYRSRPSPDYGRQRSPVYGSYDRSPVNDRYRSRS 256
Query: 378 P-RWARTSLPGRNA 416
P R +R+ L R A
Sbjct: 257 PVRRSRSPLANRRA 270
>02_03_0093 -
15120951-15121344,15121658-15121953,15122119-15122419,
15123233-15123628,15123883-15124067
Length = 523
Score = 31.9 bits (69), Expect = 0.56
Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
Frame = +1
Query: 139 HPLNDSPALLHPTSDLSPGSEPVQSRGVPAVNTTTRHAAPPRGR---PTDGSLRR*STTN 309
HP + P L TS+ PG PV++ G+ + +T R PPR P+ R S+
Sbjct: 405 HP--EGPKLHAITSESQPGQAPVRTGGMRLMTSTGRDNQPPRSSGVPPSPSEWRSSSSRW 462
Query: 310 DVG 318
D+G
Sbjct: 463 DLG 465
>07_03_0682 + 20667365-20667655
Length = 96
Score = 29.5 bits (63), Expect = 3.0
Identities = 26/63 (41%), Positives = 30/63 (47%), Gaps = 5/63 (7%)
Frame = +3
Query: 216 GGSRGQHYNQTR---GATPRTPDRRVVEAIVD--DQRRRSPRYGGPTRSPGRCRWCSGIP 380
G GQ +TR G +T R VVEA +RRR+ R G PGRCR SG
Sbjct: 6 GQGDGQSRRRTRTSDGGQSQTRRRPVVEARQGGGSRRRRTERRWGRDGRPGRCR--SGAE 63
Query: 381 RWA 389
R A
Sbjct: 64 REA 66
>05_03_0649 -
16566815-16567392,16567491-16567623,16568000-16568765,
16569242-16569260,16569320-16569367,16569401-16569506
Length = 549
Score = 29.5 bits (63), Expect = 3.0
Identities = 22/64 (34%), Positives = 27/64 (42%), Gaps = 5/64 (7%)
Frame = +1
Query: 142 PLNDSPALLHPTSDLSPGSEPVQSRGVPAVNTTTRHAAPPR-----GRPTDGSLRR*STT 306
P D P + P+S SP P S A HAAPPR RP +L S++
Sbjct: 115 PWLDMPPVQGPSSSPSPSPSPAPSPASSAA--VAEHAAPPRRGEEHARPRSIALPPASSS 172
Query: 307 NDVG 318
D G
Sbjct: 173 GDAG 176
>04_04_1330 - 32700333-32700770
Length = 145
Score = 29.5 bits (63), Expect = 3.0
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = +3
Query: 180 RSQSGVRTRSE*GGSRGQHYNQTRGATPRTPDRRVVEAIVDDQR 311
R + G E GG R +H + A+P P+R VV + + +R
Sbjct: 22 RRRGGGSDGEELGGGRDEHEGERERASPVEPEREVVGVVGERER 65
>11_06_0610 - 25449085-25453284
Length = 1399
Score = 29.1 bits (62), Expect = 3.9
Identities = 16/46 (34%), Positives = 21/46 (45%)
Frame = +1
Query: 484 PHRSPQPPTRRPVLLVPARXSDGSVRRSLNPLXVAP*PSPGRGLPP 621
P SP PP + P P S +V+ P V+ P P + LPP
Sbjct: 1237 PVISPPPPEKSPPPAAPVILSPPAVKSLPPPAPVSLPPPPVKSLPP 1282
>04_03_0655 +
18436363-18436901,18436984-18437772,18437952-18438028,
18438034-18438248
Length = 539
Score = 29.1 bits (62), Expect = 3.9
Identities = 15/55 (27%), Positives = 22/55 (40%)
Frame = +2
Query: 41 LRGPRA*GARGVCETQRSAGVESRSRAQGILGPTH*TTPLHSYTRRPISVRGQNP 205
L+GPR G R G + +R + +L P H P R + + NP
Sbjct: 231 LQGPRPGGGRATAIVGGGGGADHGARRRALLVPRHPAEPRRRAGRPGVCIHDANP 285
>04_01_0296 + 3927741-3927960,3928257-3928900
Length = 287
Score = 28.7 bits (61), Expect = 5.2
Identities = 22/65 (33%), Positives = 27/65 (41%)
Frame = +1
Query: 28 GAEPPTRSPRLGGARGM*DSTICRC*EQIAGPRYFRAHPLNDSPALLHPTSDLSPGSEPV 207
G TR+ G ST CRC Q+ R P D P L TS+ G PV
Sbjct: 205 GTYRETRNVARKEREGSSSSTPCRCMRQVG--RQLGMRP--DGPKLHATTSESQAGQVPV 260
Query: 208 QSRGV 222
++ GV
Sbjct: 261 RTGGV 265
>03_02_0511 +
9016215-9016425,9017292-9017365,9018399-9018609,
9019235-9019263,9019646-9020798,9021022-9021251
Length = 635
Score = 28.7 bits (61), Expect = 5.2
Identities = 20/52 (38%), Positives = 29/52 (55%)
Frame = +2
Query: 311 TSVSAVRRPYQVARAVPLVFRDTPLGQNQPAGSERDTPPTGLLFNSIFGDDS 466
TS SA PY +RA P+ ++ P Q + + S DTP + ++IFG DS
Sbjct: 380 TSRSACDTPY--SRASPIPEQEVPTAQWKTSRSACDTPYSRNSPSNIFGLDS 429
>11_02_0059 -
7883980-7884141,7884423-7884467,7884629-7884715,
7885746-7885874,7885995-7886151,7886248-7886350,
7887050-7887103,7887334-7887451,7888549-7888700,
7890166-7891852
Length = 897
Score = 28.3 bits (60), Expect = 6.9
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = +1
Query: 199 EPVQSRGVPAVNTTTRHAAPPRGRPTDG 282
E + +RG T +HA PPRG P G
Sbjct: 119 EKMMTRGRAETETARKHAPPPRGLPLLG 146
>10_01_0030 -
386008-388056,388166-388360,388931-389062,389167-389538,
389753-389894,392274-392533,392737-393015,394796-394939
Length = 1190
Score = 28.3 bits (60), Expect = 6.9
Identities = 18/53 (33%), Positives = 22/53 (41%)
Frame = +2
Query: 209 RVGGFPRSTLQPDTRRHPEDARPTGR*GDSRRPTTSVSAVRRPYQVARAVPLV 367
RVG P P P DAR G S + +VS V R QV + +V
Sbjct: 770 RVGSTPNKNAAPKQVWEPMDARKKASLGSSNGSSETVSGVDRSNQVGCSKDIV 822
>08_02_0154 -
13324384-13325351,13326306-13326502,13326695-13327274,
13328324-13328446,13328803-13329130
Length = 731
Score = 28.3 bits (60), Expect = 6.9
Identities = 17/46 (36%), Positives = 22/46 (47%)
Frame = +1
Query: 85 STICRC*EQIAGPRYFRAHPLNDSPALLHPTSDLSPGSEPVQSRGV 222
ST CRC Q+ HP D P L S+ PG PV++ G+
Sbjct: 645 STPCRCMRQVGSQ--LGMHP--DGPKLDVTVSESQPGQVPVRTSGM 686
>05_07_0104 + 27715123-27715350
Length = 75
Score = 28.3 bits (60), Expect = 6.9
Identities = 11/21 (52%), Positives = 11/21 (52%)
Frame = -2
Query: 306 GRRLSPQRPVGRASSGWRRVS 244
GRRL P P R W RVS
Sbjct: 31 GRRLHPPAPAARGGGAWNRVS 51
>05_06_0122 -
25775652-25775936,25776027-25776103,25776177-25776281,
25776353-25776542,25776617-25776804,25776882-25777191
Length = 384
Score = 28.3 bits (60), Expect = 6.9
Identities = 23/80 (28%), Positives = 29/80 (36%), Gaps = 1/80 (1%)
Frame = +2
Query: 242 PDTRRHPEDARP-TGR*GDSRRPTTSVSAVRRPYQVARAVPLVFRDTPLGQNQPAGSERD 418
P HP D +P T S P T Q A A ++ P G AG +
Sbjct: 11 PSVEDHPSDNQPATDNVEPSNEPPTG-------NQSAEAEVGANQEPPTGNQSDAGPSQK 63
Query: 419 TPPTGLLFNSIFGDDSDDEN 478
P NS G D+D E+
Sbjct: 64 VPEVEAQTNSPLGKDADSES 83
>12_01_0830 -
7678038-7678444,7678996-7680943,7681231-7681983,
7682701-7682824,7683590-7683723
Length = 1121
Score = 27.9 bits (59), Expect = 9.1
Identities = 18/40 (45%), Positives = 20/40 (50%)
Frame = +3
Query: 162 TLTPDVRSQSGVRTRSE*GGSRGQHYNQTRGATPRTPDRR 281
TLTP RS S R S G N TRGA+P +RR
Sbjct: 151 TLTPPRRSPSPASRRMS-ATSSGPTLNGTRGASPVKTNRR 189
>09_02_0224 - 5984128-5984923,5985667-5986718,5986800-5987776,
5988427-5989228,5990966-5991016,5992391-5993464,
5994458-5994706
Length = 1666
Score = 27.9 bits (59), Expect = 9.1
Identities = 11/18 (61%), Positives = 12/18 (66%)
Frame = -3
Query: 74 PRAPPRRGDLVGGSAPGP 21
P PP+ G LVGGS P P
Sbjct: 1200 PATPPKGGPLVGGSLPCP 1217
>08_02_0146 -
13195691-13196658,13197613-13197809,13198002-13198479,
13199660-13199782,13200139-13200466
Length = 697
Score = 27.9 bits (59), Expect = 9.1
Identities = 17/46 (36%), Positives = 22/46 (47%)
Frame = +1
Query: 85 STICRC*EQIAGPRYFRAHPLNDSPALLHPTSDLSPGSEPVQSRGV 222
ST CRC Q+ HP D P L S+ PG PV++ G+
Sbjct: 611 STPCRCMRQVGSQ--LGMHP--DGPKLDVTVSESQPGQVPVRTGGM 652
>08_02_0110 +
12650328-12650552,12650827-12651423,12651480-12651857,
12651997-12652218,12652407-12652483,12652553-12652631,
12652920-12653105
Length = 587
Score = 27.9 bits (59), Expect = 9.1
Identities = 16/46 (34%), Positives = 19/46 (41%)
Frame = +1
Query: 484 PHRSPQPPTRRPVLLVPARXSDGSVRRSLNPLXVAP*PSPGRGLPP 621
P R P P+R PV+ P S R P+ P P P PP
Sbjct: 205 PPRIPVSPSRPPVVASPRDSPIASPSRPEPPVASPPGPEPPVASPP 250
>08_01_0554 - 4851698-4851943,4852041-4852760
Length = 321
Score = 27.9 bits (59), Expect = 9.1
Identities = 19/40 (47%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Frame = +2
Query: 347 ARAVPLVFRDTPLGQNQPAG-SERDTPPTGLLFNSIFGDD 463
AR + F D LG N PAG E DTP LL F DD
Sbjct: 164 ARERGMSFGDALLGNNHPAGLREIDTP---LLDEKFFSDD 200
>06_03_0332 + 19652207-19652995
Length = 262
Score = 27.9 bits (59), Expect = 9.1
Identities = 12/14 (85%), Positives = 12/14 (85%)
Frame = -1
Query: 523 GRGDASAAADCDAV 482
GRGDA AAADC AV
Sbjct: 91 GRGDAKAAADCCAV 104
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,231,482
Number of Sequences: 37544
Number of extensions: 490274
Number of successful extensions: 1755
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1666
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1755
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1980691104
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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