Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP17_T7_J04
         (770 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ...   148   1e-36
SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0...   146   4e-36
SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit S2|S...    40   3e-04
SPAC27E2.06c |||methionine-tRNA ligase, mitochondrial|Schizosacc...    28   1.3  
SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces pombe...    26   6.9  
SPBC1685.14c |||Vid27 family protein|Schizosaccharomyces pombe|c...    25   9.1  

>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
           S0B|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 287

 Score =  148 bits (358), Expect = 1e-36
 Identities = 80/147 (54%), Positives = 96/147 (65%)
 Frame = -3

Query: 768 PXDVXVISSRPFGQRAVXKFXXAHRXYAYCGTFHXQVLLLTRSKLHSVNLRLLIVLDPAQ 589
           P DV VISSRP+G RAV KF       A  G F         ++ +    RL+IV DP  
Sbjct: 74  PADVCVISSRPYGHRAVLKFAAHTGATAIAGRFTPGNFTNYITRTYR-EPRLIIVTDPRA 132

Query: 588 DHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVL 409
           D Q I EAS+VNIPVIALC+TDS L  VD+AIP N K   SIGL W+LLAREVLRLRG +
Sbjct: 133 DAQAIKEASFVNIPVIALCDTDSILNHVDVAIPINNKGYKSIGLAWYLLAREVLRLRGNI 192

Query: 408 PRDQRRDVVVDLFFYRDPEESEKDEQQ 328
            R    +V+ DL+FYRDPEE E++E+Q
Sbjct: 193 SRTTAWEVMPDLYFYRDPEEIEREEEQ 219


>SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0A
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 292

 Score =  146 bits (353), Expect = 4e-36
 Identities = 78/149 (52%), Positives = 96/149 (64%)
 Frame = -3

Query: 768 PXDVXVISSRPFGQRAVXKFXXAHRXYAYCGTFHXQVLLLTRSKLHSVNLRLLIVLDPAQ 589
           P DV V+S+R +G RAV KF       A  G F         ++ +    RL++V DP  
Sbjct: 73  PADVCVVSTRTYGHRAVLKFAAHTGATAIAGRFTPGNFTNYITRTYR-EPRLIVVTDPRA 131

Query: 588 DHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVL 409
           D Q I EAS+VNIPVIALC+TDS L  VDIAIP N K   SIGL+W+LLAREVLR+RG L
Sbjct: 132 DAQAIKEASFVNIPVIALCDTDSILNHVDIAIPTNNKGRKSIGLIWYLLAREVLRVRGTL 191

Query: 408 PRDQRRDVVVDLFFYRDPEESEKDEQQAK 322
            R    DV+ DL+FYRDPEE E++E+  K
Sbjct: 192 SRSAPWDVMPDLYFYRDPEEVEREEEAKK 220


>SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit
           S2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 263

 Score = 40.3 bits (90), Expect = 3e-04
 Identities = 23/74 (31%), Positives = 37/74 (50%)
 Frame = -3

Query: 657 LLLTRSKLHSVNLRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTK 478
           L+ T  K   V   L+++L+P ++     EA   ++P I + +TD+  R V   IP N  
Sbjct: 168 LIQTDKKPSYVFPDLMVILNPLENKSACLEAQKTHVPTIGIIDTDADPRMVTYPIPANDD 227

Query: 477 SSHSIGLMWWLLAR 436
           S     L+  LL+R
Sbjct: 228 SLRCTDLIAGLLSR 241


>SPAC27E2.06c |||methionine-tRNA ligase,
           mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 539

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = -3

Query: 573 TEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSI 463
           T A    +  + LC+ +S  RF D+A+  NTK +H I
Sbjct: 75  TVAQTEGVSPLQLCDRNSK-RFADLAVAANTKFTHFI 110


>SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 564

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
 Frame = -1

Query: 410 FPVTSAGML--WLICSSTVTLKKVKRM 336
           FP  S  ++  WL   +TVTLKK+K +
Sbjct: 480 FPFQSTVLILSWLCVENTVTLKKIKML 506


>SPBC1685.14c |||Vid27 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 801

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = -3

Query: 402 DQRRDVVVDLFFYRDPEESEKDEQQAKEQ 316
           D++RD V++ F   +  E  +DE+ A++Q
Sbjct: 361 DEQRDYVMETFHEDEELEDSEDEEFARQQ 389


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,748,685
Number of Sequences: 5004
Number of extensions: 51729
Number of successful extensions: 131
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 371330890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)