Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP17_T7_J01
         (722 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein L3|Sch...   202   3e-53
SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3 |Schiz...   202   3e-53
SPBC685.09 |orc2|orp2|origin recognition complex subunit Orc2|Sc...    29   0.67 
SPAC1093.03 |||inositol polyphosphate phosphatase |Schizosacchar...    29   0.89 
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    27   2.7  
SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr...    27   3.6  
SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces pombe...    26   4.7  
SPAC23A1.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    26   6.3  
SPAC22F8.07c |rtf1||replication termination factor Rtf1|Schizosa...    25   8.3  

>SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein
           L3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score =  202 bits (494), Expect = 3e-53
 Identities = 99/170 (58%), Positives = 115/170 (67%)
 Frame = -3

Query: 618 KDTKGXXXXWXXXXXXXXXXXXXRKVACIGAWHPXRVSFTVARAGQKGYHHRTEMNKKIY 439
           K  +G    W             RKVACIGAWHP  V +TVARAG  GY HRT++N KIY
Sbjct: 224 KGNEGTTARWGTKRLPRKTHRGLRKVACIGAWHPANVQWTVARAGNAGYMHRTQLNSKIY 283

Query: 438 RIGQGIHKKDGKVVKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRII 259
           RIG G    D K    NAST++D +EK ITPMGGF  YG V NDFVM+ G   GP KR++
Sbjct: 284 RIGAG---DDAK----NASTDFDATEKRITPMGGFVRYGVVENDFVMLNGATPGPVKRVL 336

Query: 258 TLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKKD 109
           TLRKSL  HT R ALE ++LK+IDT+SKFGHGRFQTPA+   F+GTLKKD
Sbjct: 337 TLRKSLLTHTSRKALEPVSLKWIDTASKFGHGRFQTPAEAKQFLGTLKKD 386



 Score = 27.9 bits (59), Expect = 1.6
 Identities = 12/17 (70%), Positives = 14/17 (82%)
 Frame = -2

Query: 655 DEMIXXIGVTRGKGYKG 605
           +EMI  IGVTRGKG +G
Sbjct: 212 NEMIDVIGVTRGKGNEG 228


>SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score =  202 bits (494), Expect = 3e-53
 Identities = 99/170 (58%), Positives = 115/170 (67%)
 Frame = -3

Query: 618 KDTKGXXXXWXXXXXXXXXXXXXRKVACIGAWHPXRVSFTVARAGQKGYHHRTEMNKKIY 439
           K  +G    W             RKVACIGAWHP  V +TVARAG  GY HRT++N KIY
Sbjct: 224 KGNEGTTARWGTKRLPRKTHRGLRKVACIGAWHPANVQWTVARAGNAGYMHRTQLNSKIY 283

Query: 438 RIGQGIHKKDGKVVKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRII 259
           RIG G    D K    NAST++D +EK ITPMGGF  YG V NDFVM+ G   GP KR++
Sbjct: 284 RIGAG---DDAK----NASTDFDATEKRITPMGGFVRYGVVENDFVMLNGATPGPVKRVL 336

Query: 258 TLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKKD 109
           TLRKSL  HT R ALE ++LK+IDT+SKFGHGRFQTPA+   F+GTLKKD
Sbjct: 337 TLRKSLLTHTSRKALEPVSLKWIDTASKFGHGRFQTPAEAKQFLGTLKKD 386



 Score = 27.9 bits (59), Expect = 1.6
 Identities = 12/17 (70%), Positives = 14/17 (82%)
 Frame = -2

Query: 655 DEMIXXIGVTRGKGYKG 605
           +EMI  IGVTRGKG +G
Sbjct: 212 NEMIDVIGVTRGKGNEG 228


>SPBC685.09 |orc2|orp2|origin recognition complex subunit
           Orc2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 535

 Score = 29.1 bits (62), Expect = 0.67
 Identities = 11/33 (33%), Positives = 21/33 (63%)
 Frame = +1

Query: 400 NFAILFVDSLSNTIDFLVHFSTVMITFLTSTSY 498
           NFA+L+  SL ++ +F++H +T    +   T+Y
Sbjct: 377 NFALLWDTSLESSFNFVMHDATTFARYYNETTY 409


>SPAC1093.03 |||inositol polyphosphate phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 832

 Score = 28.7 bits (61), Expect = 0.89
 Identities = 15/32 (46%), Positives = 17/32 (53%)
 Frame = +2

Query: 335 KPPIGVMDFSDKSYSVDALFLTTLPSFLWIPC 430
           KPPIG+ DF D  Y+  AL    L     IPC
Sbjct: 306 KPPIGI-DFHDPFYASTALHFDRLFGHYGIPC 336


>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 230

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = +1

Query: 367 QVILSRCIVFNNFAILFVDSLSNTIDFLVHFSTVMITFLTS 489
           ++ L RC++   F +LF  S S +  FL   S + I + +S
Sbjct: 109 ELSLFRCLLLFFFFLLFFLSFSFSFSFLFFLSQIFIVYFSS 149


>SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 511

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -2

Query: 130 HGYTQEGSYSRRSCGYHNPS 71
           HGY+   +  R+ C YHNPS
Sbjct: 307 HGYSMY-ALERKMCNYHNPS 325


>SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 830

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
 Frame = +1

Query: 352 NGFLRQVILSRCIVFNNFAI-LFVDSLSNTIDFLVHFSTVMITFLTSTSYSERHPXRMPS 528
           N FL  +  SRC V  N+ I + V S    ++F++     M+ +  S S+  +   R+ S
Sbjct: 366 NSFLHNMGYSRCYVDENYHITIHVSSYERRVEFMLAVCEAMMLY-GSPSHKIQQSLRIAS 424


>SPAC23A1.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 251

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = +2

Query: 380 VDALFLTTLPSFLWI 424
           VDALF T +P+ LWI
Sbjct: 158 VDALFCTRIPASLWI 172


>SPAC22F8.07c |rtf1||replication termination factor
           Rtf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 466

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 14/42 (33%), Positives = 19/42 (45%)
 Frame = +1

Query: 412 LFVDSLSNTIDFLVHFSTVMITFLTSTSYSERHPXRMPSSNA 537
           LF+D LS   D L+H   ++ +    T  S  H      SNA
Sbjct: 421 LFIDGLSTFSDTLIHLHKMLNSSPEETYISNLHDSYTAFSNA 462


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,662,561
Number of Sequences: 5004
Number of extensions: 52944
Number of successful extensions: 152
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 339215786
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)