Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP17_T7_J01
(722 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_01_0427 + 3274817-3274901,3275587-3275697,3275979-3276283,327... 215 3e-56
12_01_0435 + 3428552-3428636,3429242-3429352,3429434-3429738,342... 208 4e-54
05_03_0496 + 14706959-14707020,14707173-14707538,14708070-147082... 30 1.6
03_05_1096 - 30364144-30365310,30365825-30365971,30366087-303663... 29 2.8
08_02_0918 - 22617388-22617693,22617799-22617848,22618538-226188... 28 6.5
>11_01_0427 +
3274817-3274901,3275587-3275697,3275979-3276283,
3276406-3276815,3276942-3277200
Length = 389
Score = 215 bits (525), Expect = 3e-56
Identities = 103/168 (61%), Positives = 119/168 (70%)
Frame = -3
Query: 618 KDTKGXXXXWXXXXXXXXXXXXXRKVACIGAWHPXRVSFTVARAGQKGYHHRTEMNKKIY 439
K +G W RKVACIGAWHP RVS+TVARAGQ GYHHRTEMNKK+Y
Sbjct: 227 KGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVY 286
Query: 438 RIGQGIHKKDGKVVKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRII 259
+IG K G+ + A TE+D +EK ITPMGGFPHYG V D++MIKGCC+GPKKR++
Sbjct: 287 KIG-----KSGQE-SHAACTEFDRTEKDITPMGGFPHYGVVKGDYLMIKGCCVGPKKRVV 340
Query: 258 TLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLK 115
TLR+SL T R ALE+I LKFIDTSSKFGHGRFQT +K F G LK
Sbjct: 341 TLRQSLLKQTSRLALEEIKLKFIDTSSKFGHGRFQTTDEKQRFFGKLK 388
Score = 32.3 bits (70), Expect = 0.40
Identities = 13/17 (76%), Positives = 15/17 (88%)
Frame = -2
Query: 655 DEMIXXIGVTRGKGYKG 605
DEMI IGVT+GKGY+G
Sbjct: 215 DEMIDIIGVTKGKGYEG 231
>12_01_0435 +
3428552-3428636,3429242-3429352,3429434-3429738,
3429821-3430230,3430323-3430556,3430934-3431378,
3432300-3432390,3433292-3433518,3433786-3433861,
3434009-3434134,3434221-3434384
Length = 757
Score = 208 bits (507), Expect = 4e-54
Identities = 99/160 (61%), Positives = 115/160 (71%)
Frame = -3
Query: 618 KDTKGXXXXWXXXXXXXXXXXXXRKVACIGAWHPXRVSFTVARAGQKGYHHRTEMNKKIY 439
K +G W RKVACIGAWHP RVS+TVARAGQ GYHHRTEMNKK+Y
Sbjct: 227 KGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVY 286
Query: 438 RIGQGIHKKDGKVVKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRII 259
+IG K G+ + A TE+D +EK ITPMGGFPHYG V D++MIKGCC+GPKKR++
Sbjct: 287 KIG-----KSGQE-SHAACTEFDRTEKDITPMGGFPHYGVVKGDYLMIKGCCVGPKKRVV 340
Query: 258 TLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADK 139
TLR+SL T R ALE+I LKFIDTSSKFGHGRFQT +K
Sbjct: 341 TLRQSLLKQTSRLALEEIKLKFIDTSSKFGHGRFQTTDEK 380
Score = 32.3 bits (70), Expect = 0.40
Identities = 13/17 (76%), Positives = 15/17 (88%)
Frame = -2
Query: 655 DEMIXXIGVTRGKGYKG 605
DEMI IGVT+GKGY+G
Sbjct: 215 DEMIDIIGVTKGKGYEG 231
>05_03_0496 +
14706959-14707020,14707173-14707538,14708070-14708209,
14708319-14708566,14708814-14708946,14709096-14709159,
14709284-14709380,14709505-14709607,14709702-14709838,
14710063-14710152,14710240-14710401
Length = 533
Score = 30.3 bits (65), Expect = 1.6
Identities = 16/41 (39%), Positives = 19/41 (46%)
Frame = +1
Query: 1 FFFFFFALSNVYFHGRHLRLRSSRWGCGSRSFFANTILLEC 123
FFFFFF +VY RH R R R R F ++ C
Sbjct: 102 FFFFFFFSGDVYCGHRHFRRRRRRRQWDGRLVFGSSGASAC 142
>03_05_1096 - 30364144-30365310,30365825-30365971,30366087-30366393,
30366541-30366849,30367544-30370567,30370640-30372290,
30372373-30373463,30373544-30373646,30373737-30374439,
30374654-30375783,30375913-30376027,30376504-30376695,
30377443-30377616,30378438-30378494,30378581-30378716,
30378842-30378927,30379023-30379092,30379993-30380021,
30380444-30380456,30380762-30381006
Length = 3582
Score = 29.5 bits (63), Expect = 2.8
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = -3
Query: 372 DLSEKSITPMGGFPHYGEVNNDFVMIKGCCMG 277
D + + +P+GG P YG ++ D + C +G
Sbjct: 1371 DPTSAAASPIGGIPRYGRLSGDVYVCNQCTIG 1402
>08_02_0918 -
22617388-22617693,22617799-22617848,22618538-22618817,
22619654-22620340,22622870-22622944,22623150-22623285,
22624801-22625093,22625776-22626597
Length = 882
Score = 28.3 bits (60), Expect = 6.5
Identities = 22/78 (28%), Positives = 32/78 (41%), Gaps = 10/78 (12%)
Frame = -3
Query: 513 RVSFTVARAGQKGYHHRTEMNKKIYRIGQG----------IHKKDGKVVKNNASTEYDLS 364
+V F + GY H + +N ++ I G IH+ D V E LS
Sbjct: 361 QVIFMNRESANNGYMHTSSVNYELETIRSGTWLDVEHPRKIHRLDLDAVDQQKQLEKYLS 420
Query: 363 EKSITPMGGFPHYGEVNN 310
EKS P+ FP V++
Sbjct: 421 EKSNIPIPPFPDSSSVSS 438
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,704,377
Number of Sequences: 37544
Number of extensions: 356177
Number of successful extensions: 817
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 789
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 813
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1886372480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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