Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP17_T7_I24
         (774 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    25   1.0  
DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    22   5.5  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   5.5  

>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 24.6 bits (51), Expect = 1.0
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = +2

Query: 485 TERNAHLLACAWRNSSAYSDEANL 556
           T+RN +LLA + RN +  +++ NL
Sbjct: 370 TQRNEYLLALSDRNQNVLNNDLNL 393


>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 14/54 (25%), Positives = 24/54 (44%)
 Frame = +1

Query: 406 IYAQSFIQALKRFRMSSSFKMFNAFCHRTKCPFTCLCLA*FICVFR*SESSSQI 567
           I A SFI+ ++R R+      F    ++     TC  +      F   +SSS++
Sbjct: 182 IVADSFIELIRRQRVGYKVTGFEELAYKMGLESTCTLILGRHLGFLKPDSSSEL 235


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 7/27 (25%), Positives = 16/27 (59%)
 Frame = +3

Query: 423 YSSIETLQNVFQL*NVQCLLPQNEMPI 503
           +S  +   N  +  N+QC++P  ++P+
Sbjct: 588 FSFTKLPMNAGEFANLQCIVPTGDLPL 614


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 194,619
Number of Sequences: 438
Number of extensions: 3593
Number of successful extensions: 13
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24275400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)