Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP17_T7_I18
(797 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_1174 - 26696869-26698191 34 0.15
01_01_0070 - 542603-542686,542803-543441 32 0.61
11_06_0610 - 25449085-25453284 30 2.5
07_03_0890 - 22332768-22333382 29 3.2
06_01_0486 - 3455030-3455770 29 5.7
>12_02_1174 - 26696869-26698191
Length = 440
Score = 33.9 bits (74), Expect = 0.15
Identities = 22/88 (25%), Positives = 26/88 (29%), Gaps = 2/88 (2%)
Frame = -3
Query: 771 PPPXXXTXPXXPXKXPPKKKKPXXXKTPXGXPGXXPXXXR--XXXPXXXXXXXXPXXTRK 598
PPP T P + PP K +P P P P R P P + +
Sbjct: 127 PPPRTRTRVEPPHRPPPVKPQPPPSLPPPPPPPPPPPPPRPPSVKPPVVQPKPQPPPSLQ 186
Query: 597 XPXXXXPXXXXPXKXXXXXKPPXXTPPP 514
P P P P PPP
Sbjct: 187 PPSPPPPPPTRPPSVKPPVVQPKPQPPP 214
Score = 31.1 bits (67), Expect = 1.1
Identities = 22/87 (25%), Positives = 23/87 (26%)
Frame = -3
Query: 774 KPPPXXXTXPXXPXKXPPKKKKPXXXKTPXGXPGXXPXXXRXXXPXXXXXXXXPXXTRKX 595
KP P P P PP +P K P P P P P
Sbjct: 145 KPQPPPSLPPPPPPPPPPPPPRPPSVKPPVVQPKPQP-------PPSLQPPSPPPPPPTR 197
Query: 594 PXXXXPXXXXPXKXXXXXKPPXXTPPP 514
P P P PP PPP
Sbjct: 198 PPSVKPPVVQPKPQPPPTLPPPSPPPP 224
Score = 27.9 bits (59), Expect = 9.9
Identities = 22/85 (25%), Positives = 22/85 (25%)
Frame = -3
Query: 768 PPXXXTXPXXPXKXPPKKKKPXXXKTPXGXPGXXPXXXRXXXPXXXXXXXXPXXTRKXPX 589
PP P P PP P P PG P P P K P
Sbjct: 203 PPVVQPKPQPPPTLPPPSPPPPPPTVPPRTPGDTPAVVE---PKPQPPPPPPRAPVKMPR 259
Query: 588 XXXPXXXXPXKXXXXXKPPXXTPPP 514
P P PP PPP
Sbjct: 260 VLEPKPSPP--------PPSPLPPP 276
>01_01_0070 - 542603-542686,542803-543441
Length = 240
Score = 31.9 bits (69), Expect = 0.61
Identities = 23/86 (26%), Positives = 24/86 (27%), Gaps = 2/86 (2%)
Frame = -3
Query: 765 PXXXTXPXXPXKXPPKKKKPXXXKTPXGXPGXXPXXXRXXXPXXXXXXXXPXXTRKXPXX 586
P P P K PP P TP P P P P +K P
Sbjct: 36 PTPTPVPTAPAKSPPAPATPAPTATPT--PPVAPAKAPPVAPAVAPVTPPPPTPKKAPPP 93
Query: 585 XX--PXXXXPXKXXXXXKPPXXTPPP 514
P P PP TPPP
Sbjct: 94 PVTPPPVTPPPVTPPPVSPPPATPPP 119
>11_06_0610 - 25449085-25453284
Length = 1399
Score = 29.9 bits (64), Expect = 2.5
Identities = 23/110 (20%), Positives = 26/110 (23%)
Frame = -3
Query: 795 PXXXXXKKPPPXXXTXPXXPXKXPPKKKKPXXXKTPXGXPGXXPXXXRXXXPXXXXXXXX 616
P PP P P K P +KP TP P P
Sbjct: 967 PSPTPKSSPPSHEEYVPPSPAKSTPPPEKPLPPHTPT-INSSPPSEEEYMPPSPVKSSPP 1025
Query: 615 PXXTRKXPXXXXPXXXXPXKXXXXXKPPXXTPPPXXXGXAXIXXXXEXXP 466
P + P P K P PPP + E P
Sbjct: 1026 PAEKSQPPPSPVESVLPPVKSSPPHAPVISEPPPTKSSPPQVPVTSEPPP 1075
Score = 29.1 bits (62), Expect = 4.3
Identities = 21/94 (22%), Positives = 26/94 (27%)
Frame = -3
Query: 795 PXXXXXKKPPPXXXTXPXXPXKXPPKKKKPXXXKTPXGXPGXXPXXXRXXXPXXXXXXXX 616
P +PPP + P P P +K TP P + P
Sbjct: 1065 PQVPVTSEPPPAKSSPPHEPISPPETPEKSYPPSTP--EESSPPSVPKASSPPTEKSLPP 1122
Query: 615 PXXTRKXPXXXXPXXXXPXKXXXXXKPPXXTPPP 514
P P P P PP +PPP
Sbjct: 1123 PATVSLPPPTVKP--LPPPVPVSSPPPPEKSPPP 1154
Score = 27.9 bits (59), Expect = 9.9
Identities = 21/94 (22%), Positives = 23/94 (24%)
Frame = -3
Query: 795 PXXXXXKKPPPXXXTXPXXPXKXPPKKKKPXXXKTPXGXPGXXPXXXRXXXPXXXXXXXX 616
P PPP P P K PP P P P
Sbjct: 1145 PPPPEKSPPPPAPVILPPPPIKSPPPPAPVISPPPPVKSPPPPAPVILPPPPVKSPPPPA 1204
Query: 615 PXXTRKXPXXXXPXXXXPXKXXXXXKPPXXTPPP 514
P + P P P PP +PPP
Sbjct: 1205 PVISPPPPVKSPP----PPAPVILPPPPVKSPPP 1234
>07_03_0890 - 22332768-22333382
Length = 204
Score = 29.5 bits (63), Expect = 3.2
Identities = 12/32 (37%), Positives = 14/32 (43%)
Frame = -3
Query: 771 PPPXXXTXPXXPXKXPPKKKKPXXXKTPXGXP 676
PPP T P P PP++ P TP P
Sbjct: 77 PPPAEATPPPPPPPPPPERAVPEAADTPPPPP 108
>06_01_0486 - 3455030-3455770
Length = 246
Score = 28.7 bits (61), Expect = 5.7
Identities = 20/94 (21%), Positives = 21/94 (22%)
Frame = -3
Query: 795 PXXXXXKKPPPXXXTXPXXPXKXPPKKKKPXXXKTPXGXPGXXPXXXRXXXPXXXXXXXX 616
P KPPP P PP + P P P P
Sbjct: 58 PEHHHHHKPPPSPRCPSCHPPYTPPTPRPPPTPPYVPSPPPYVPPYIPPPTPPYVPPYIP 117
Query: 615 PXXTRKXPXXXXPXXXXPXKXXXXXKPPXXTPPP 514
P P P PP PPP
Sbjct: 118 PPTPPYVPPPTPPSPPPYVPPPTPPSPPPYVPPP 151
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,821,725
Number of Sequences: 37544
Number of extensions: 154217
Number of successful extensions: 669
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 544
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 631
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2162420256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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