Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP17_T7_I17
(751 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_1055 - 27234824-27234838,27236087-27236125,27236322-272373... 31 1.3
02_04_0232 + 21130122-21130454,21130895-21131053,21131424-211315... 31 1.3
09_02_0062 - 3742857-3743045,3744641-3744916,3745933-3745992,374... 30 1.7
10_08_0320 + 16721772-16722041 30 2.3
07_03_0846 - 21983581-21986055 29 3.0
05_04_0396 - 20934444-20934969,20935042-20935316,20935447-20935581 29 3.0
01_06_0695 - 31292622-31293317 29 3.9
07_03_1086 + 23858419-23859423,23859527-23859610 29 5.2
03_05_0001 - 19386264-19386284,19386446-19386517,19386614-193873... 28 6.9
>06_03_1055 -
27234824-27234838,27236087-27236125,27236322-27237388,
27237422-27237630,27237650-27238053
Length = 577
Score = 30.7 bits (66), Expect = 1.3
Identities = 16/45 (35%), Positives = 27/45 (60%)
Frame = -3
Query: 353 ASLAESGKDMLTVEPRESGGSKQCDFTSRVSHSKRETRRRSPFGS 219
A+ A +GK + E E S+QCD T + +S RE ++R+P+ +
Sbjct: 430 AAAAAAGKPISEHEAIEHLWSRQCDLTEILQNSSRE-KKRNPYAA 473
>02_04_0232 +
21130122-21130454,21130895-21131053,21131424-21131582,
21132420-21132512,21133321-21133437,21133623-21133697,
21133878-21134104,21134200-21135073
Length = 678
Score = 30.7 bits (66), Expect = 1.3
Identities = 15/38 (39%), Positives = 18/38 (47%)
Frame = +2
Query: 86 PSTTPRQERKSSTDYSEPRHRTELYPDLRSRDARVKKK 199
PS TP ER S+D PR Y R+RD K+
Sbjct: 365 PSDTPHLERSQSSDRRRPRSSDPRYTPSRTRDEDAHKQ 402
>09_02_0062 -
3742857-3743045,3744641-3744916,3745933-3745992,
3746554-3748102,3748183-3748418
Length = 769
Score = 30.3 bits (65), Expect = 1.7
Identities = 19/42 (45%), Positives = 24/42 (57%)
Frame = -1
Query: 589 EAKFAKRWIVHPSKGNVSWVRPS*DRLVLPY*WLVVAIVILL 464
EA A+ VHP+ + VR S DRL+ PY L VA +LL
Sbjct: 563 EAALAQAAAVHPNHPTLKIVRISEDRLLSPYKELSVANKLLL 604
>10_08_0320 + 16721772-16722041
Length = 89
Score = 29.9 bits (64), Expect = 2.3
Identities = 16/46 (34%), Positives = 25/46 (54%)
Frame = +2
Query: 110 RKSSTDYSEPRHRTELYPDLRSRDARVKKKPIASISAIQMGFDVAS 247
R+SS+ + PR +LY LRSR K+ +A + G+D+ S
Sbjct: 26 RRSSSAVAAPRPVRQLYWKLRSRLRSSSKRHAGGAAAARFGYDLQS 71
>07_03_0846 - 21983581-21986055
Length = 824
Score = 29.5 bits (63), Expect = 3.0
Identities = 19/50 (38%), Positives = 26/50 (52%)
Frame = +1
Query: 211 DLRDPNGLRRRVSRFECETRLVKSHCLEPPDSRGSTVSISLPDSARLASA 360
DL+D G +R +C+T S PD S VS+ LPD+A+ A A
Sbjct: 326 DLQDFTGGCKRNVPLQCQTN--SSSAQTQPDKFYSMVSVRLPDNAQSAVA 373
>05_04_0396 - 20934444-20934969,20935042-20935316,20935447-20935581
Length = 311
Score = 29.5 bits (63), Expect = 3.0
Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = -3
Query: 440 GHLVHALGR-AAGGAKLPSAGLCLNASKAEASLA 342
G LV L R GG SAG+C S+ +ASLA
Sbjct: 203 GRLVETLARDGGGGGGAYSAGVCFYGSRMDASLA 236
>01_06_0695 - 31292622-31293317
Length = 231
Score = 29.1 bits (62), Expect = 3.9
Identities = 17/55 (30%), Positives = 21/55 (38%)
Frame = +2
Query: 38 PGAGLSLNRSQHDAALPSTTPRQERKSSTDYSEPRHRTELYPDLRSRDARVKKKP 202
P L Q D PS++ SST S P HR L P R ++ P
Sbjct: 3 PSTKQLLPMPQQDPNSPSSSTSSSSSSSTSPSHPHHRAPLPPSPRPVPRTIETTP 57
>07_03_1086 + 23858419-23859423,23859527-23859610
Length = 362
Score = 28.7 bits (61), Expect = 5.2
Identities = 25/76 (32%), Positives = 32/76 (42%), Gaps = 5/76 (6%)
Frame = -3
Query: 500 LLMACRCDSNTAQYERNRSFGHLVHALGRAAGGAKLPSAGLCLNA-----SKAEASLAES 336
LL CD N A + LVHAL AA A +A L A AS+ +
Sbjct: 129 LLNLSICDENKAIIVEAGAIRPLVHALKSAASPAARENAACALLRLSQLDGSAAASIGRA 188
Query: 335 GKDMLTVEPRESGGSK 288
G L V E+GG++
Sbjct: 189 GAIPLLVSLLETGGAR 204
>03_05_0001 - 19386264-19386284,19386446-19386517,19386614-19387357,
19387454-19388884,19388953-19389118,19392035-19392114,
19392393-19392462,19392550-19392761,19392837-19392890,
19393471-19393623,19393715-19393930,19394029-19394248,
19394332-19394399,19394510-19394643,19394755-19394854,
19394943-19395421,19395506-19395699,19396270-19396355,
19396364-19396444,19396842-19397023,19397305-19397346,
19398247-19398558,19399374-19399434,19399435-19399617,
19399744-19399863,19400380-19401051,19402597-19402668,
19402742-19402865,19403563-19403651,19405023-19405097
Length = 2170
Score = 28.3 bits (60), Expect = 6.9
Identities = 17/52 (32%), Positives = 22/52 (42%), Gaps = 2/52 (3%)
Frame = -1
Query: 658 LWHPSVHSDVAF*SFDVGXSYHCEAKFAKRWIVHPSKGNVSWVR--PS*DRL 509
LW V S A S G C+ + W +HP ++ VR P DRL
Sbjct: 1109 LWKVEVPSLTAIRSLSTGTVLGCQVEKHMNWYLHPEHVSILLVRLMPQLDRL 1160
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,637,756
Number of Sequences: 37544
Number of extensions: 450469
Number of successful extensions: 1249
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1213
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1249
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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