Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP17_T7_I15
         (778 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0582 - 4318837-4318967,4319219-4319399,4319504-4319701,431...    46   4e-05
07_03_1272 - 25360180-25360286,25360454-25360658,25360748-253609...    45   6e-05
12_02_1059 - 25744184-25745334,25745595-25746262,25747376-25747902     29   3.1  
12_02_1050 + 25689933-25690954,25691021-25691215,25691357-25691423     28   7.2  
01_05_0535 - 23001864-23005052                                         28   9.5  

>03_01_0582 -
           4318837-4318967,4319219-4319399,4319504-4319701,
           4319791-4320053,4320453-4320597
          Length = 305

 Score = 45.6 bits (103), Expect = 4e-05
 Identities = 23/66 (34%), Positives = 33/66 (50%)
 Frame = -1

Query: 520 PXKIFGXGFPMQHQVFXFIGXXGWLLAREXLRFRGVLPRDQRWDVVVDLXFYP*PLKKVK 341
           P +    G P  ++    IG   WLLAR  L+ RG +    +WDV+VDL FY  P +  +
Sbjct: 157 PMRYVDIGIPANNKGRNSIGCLFWLLARMVLQMRGTILPGHKWDVMVDLFFYRDPEEAKE 216

Query: 340 RMNNKP 323
           +    P
Sbjct: 217 QEEEAP 222


>07_03_1272 -
           25360180-25360286,25360454-25360658,25360748-25360945,
           25361034-25361296,25361865-25362009
          Length = 305

 Score = 45.2 bits (102), Expect = 6e-05
 Identities = 22/55 (40%), Positives = 29/55 (52%)
 Frame = -1

Query: 520 PXKIFGXGFPMQHQVFXFIGXXGWLLAREXLRFRGVLPRDQRWDVVVDLXFYP*P 356
           P +    G P  ++    IG   WLLAR  L+ RG +    +WDV+VDL FY  P
Sbjct: 157 PMRYVDIGIPANNKGKQSIGCLFWLLARMVLQMRGTILPGHKWDVMVDLFFYRDP 211


>12_02_1059 - 25744184-25745334,25745595-25746262,25747376-25747902
          Length = 781

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -2

Query: 207 TRCSSCFWSTPCSRRMVCPGTR*VEHN 127
           T C  C    P   + VCPG+R V+ N
Sbjct: 275 TECKKCLAGAPAGIKQVCPGSRTVKAN 301



 Score = 27.9 bits (59), Expect = 9.5
 Identities = 10/22 (45%), Positives = 11/22 (50%)
 Frame = -2

Query: 207 TRCSSCFWSTPCSRRMVCPGTR 142
           TRC  C    P   R  CPG+R
Sbjct: 81  TRCKECLARAPAGVRQECPGSR 102


>12_02_1050 + 25689933-25690954,25691021-25691215,25691357-25691423
          Length = 427

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = -2

Query: 207 TRCSSCFWSTPCSRRMVCPGTR*VEHN 127
           T+C  C    P     VCPG+R V  N
Sbjct: 93  TQCKECLAGAPAGITQVCPGSRTVNAN 119


>01_05_0535 - 23001864-23005052
          Length = 1062

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 4/47 (8%)
 Frame = -1

Query: 436 EXLRFRGVLPRDQRWDVVVDLXFYP*PLKKV----KRMNNKPRNRLW 308
           E +   G+LPR + +  V+DL      L K+    KRM  KP   +W
Sbjct: 813 ELMEDYGILPRIEHYSCVIDLLGRAGELDKIQEYMKRMPMKPNTLIW 859


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,335,298
Number of Sequences: 37544
Number of extensions: 186886
Number of successful extensions: 410
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 401
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 410
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2080154268
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)