Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP17_T7_I15
         (778 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z37983-1|CAA86061.1|  276|Caenorhabditis elegans Hypothetical pr...    34   0.099
AF039043-7|AAY86190.1|  103|Caenorhabditis elegans Hypothetical ...    29   2.8  
U55373-1|AAC25894.1| 1829|Caenorhabditis elegans Lethal protein ...    28   8.6  
AF308445-1|AAG29838.1| 1829|Caenorhabditis elegans LET-418 protein.    28   8.6  

>Z37983-1|CAA86061.1|  276|Caenorhabditis elegans Hypothetical
           protein B0393.1 protein.
          Length = 276

 Score = 34.3 bits (75), Expect = 0.099
 Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 5/65 (7%)
 Frame = -1

Query: 520 PXKIFGXGFPMQHQVFXFIGXXGWLLAREXLRFRGVLPRDQRW-----DVVVDLXFYP*P 356
           P K+   G P  ++    IG   W+LARE L  RG + R   +     +++ DL FY  P
Sbjct: 153 PLKLIDIGVPCNNKGERSIGLMWWMLAREILILRGKISRQTGFVLEGKEIMPDLYFYRDP 212

Query: 355 LKKVK 341
            +  K
Sbjct: 213 TETEK 217


>AF039043-7|AAY86190.1|  103|Caenorhabditis elegans Hypothetical
           protein F39C12.4 protein.
          Length = 103

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 12/21 (57%), Positives = 12/21 (57%)
 Frame = -2

Query: 213 CCTRCSSCFWSTPCSRRMVCP 151
           CCT    CF ST CS   VCP
Sbjct: 53  CCTN-EECFMSTECSYSAVCP 72


>U55373-1|AAC25894.1| 1829|Caenorhabditis elegans Lethal protein 418
            protein.
          Length = 1829

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 14/34 (41%), Positives = 23/34 (67%), Gaps = 2/34 (5%)
 Frame = +2

Query: 164  LLEQGVLQKQELQRVQQAGRYLQP--MKPLAPVF 259
            L+EQ ++ +++L+R   A R+LQP  + PLA  F
Sbjct: 1591 LIEQSLVIEEQLRRAAHANRHLQPDNVGPLAQRF 1624


>AF308445-1|AAG29838.1| 1829|Caenorhabditis elegans LET-418 protein.
          Length = 1829

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 14/34 (41%), Positives = 23/34 (67%), Gaps = 2/34 (5%)
 Frame = +2

Query: 164  LLEQGVLQKQELQRVQQAGRYLQP--MKPLAPVF 259
            L+EQ ++ +++L+R   A R+LQP  + PLA  F
Sbjct: 1591 LIEQSLVIEEQLRRAAHANRHLQPDNVGPLAQRF 1624


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,993,961
Number of Sequences: 27780
Number of extensions: 157975
Number of successful extensions: 458
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 439
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 458
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1872168044
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)