Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP17_T7_I14
         (757 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein L3|Sch...    91   2e-19
SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3 |Schiz...    91   2e-19
SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr...    27   3.8  
SPAC11E3.09 |pyp3||protein-tyrosine phosphatase Pyp3|Schizosacch...    26   6.7  

>SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein
           L3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score = 90.6 bits (215), Expect = 2e-19
 Identities = 41/61 (67%), Positives = 48/61 (78%)
 Frame = -1

Query: 292 GCCMGPKKRIITLRKSLRVHTKRAALEKINLKLIDTSSKFGHGRFQTPADKAAFMGTLKK 113
           G   GP KR++TLRKSL  HT R ALE ++LK IDT+SKFGHGRFQTPA+   F+GTLKK
Sbjct: 326 GATPGPVKRVLTLRKSLLTHTSRKALEPVSLKWIDTASKFGHGRFQTPAEAKQFLGTLKK 385

Query: 112 D 110
           D
Sbjct: 386 D 386



 Score = 46.0 bits (104), Expect = 6e-06
 Identities = 20/38 (52%), Positives = 24/38 (63%)
 Frame = -3

Query: 392 NAFTEYDXFENPLHPMGGFPHYGEVNNDFVMIQGLLHG 279
           NA T++D  E  + PMGGF  YG V NDFVM+ G   G
Sbjct: 293 NASTDFDATEKRITPMGGFVRYGVVENDFVMLNGATPG 330


>SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score = 90.6 bits (215), Expect = 2e-19
 Identities = 41/61 (67%), Positives = 48/61 (78%)
 Frame = -1

Query: 292 GCCMGPKKRIITLRKSLRVHTKRAALEKINLKLIDTSSKFGHGRFQTPADKAAFMGTLKK 113
           G   GP KR++TLRKSL  HT R ALE ++LK IDT+SKFGHGRFQTPA+   F+GTLKK
Sbjct: 326 GATPGPVKRVLTLRKSLLTHTSRKALEPVSLKWIDTASKFGHGRFQTPAEAKQFLGTLKK 385

Query: 112 D 110
           D
Sbjct: 386 D 386



 Score = 46.0 bits (104), Expect = 6e-06
 Identities = 20/38 (52%), Positives = 24/38 (63%)
 Frame = -3

Query: 392 NAFTEYDXFENPLHPMGGFPHYGEVNNDFVMIQGLLHG 279
           NA T++D  E  + PMGGF  YG V NDFVM+ G   G
Sbjct: 293 NASTDFDATEKRITPMGGFVRYGVVENDFVMLNGATPG 330


>SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 511

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -3

Query: 131 HGYTQEGSYSRRSCGYHNPS 72
           HGY+   +  R+ C YHNPS
Sbjct: 307 HGYSMY-ALERKMCNYHNPS 325


>SPAC11E3.09 |pyp3||protein-tyrosine phosphatase
           Pyp3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 303

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = -3

Query: 458 NEQEIXFIGPGIPKRMAKLLKTNAFTEYDXFEN 360
           NE+EI  +   +PK   K L  N ++    +EN
Sbjct: 31  NEEEIELLNTRLPKLSKKALARNRYSNIVPYEN 63


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,455,313
Number of Sequences: 5004
Number of extensions: 43236
Number of successful extensions: 93
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 361294920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)