Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP17_T7_I14
         (757 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0427 + 3274817-3274901,3275587-3275697,3275979-3276283,327...    91   9e-19
12_01_0435 + 3428552-3428636,3429242-3429352,3429434-3429738,342...    84   1e-16
11_01_0456 + 3522599-3523921,3524005-3524027,3524097-3525265,352...    29   4.0  
12_01_1091 + 11349034-11349438,11350581-11350748,11351189-113515...    29   5.3  
08_01_0332 + 2971361-2971439,2971596-2971783,2971985-2972062,297...    28   7.0  

>11_01_0427 +
           3274817-3274901,3275587-3275697,3275979-3276283,
           3276406-3276815,3276942-3277200
          Length = 389

 Score = 91.1 bits (216), Expect = 9e-19
 Identities = 41/60 (68%), Positives = 47/60 (78%)
 Frame = -1

Query: 295 KGCCMGPKKRIITLRKSLRVHTKRAALEKINLKLIDTSSKFGHGRFQTPADKAAFMGTLK 116
           KGCC+GPKKR++TLR+SL   T R ALE+I LK IDTSSKFGHGRFQT  +K  F G LK
Sbjct: 329 KGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFGHGRFQTTDEKQRFFGKLK 388



 Score = 48.0 bits (109), Expect = 8e-06
 Identities = 20/37 (54%), Positives = 25/37 (67%)
 Frame = -3

Query: 389 AFTEYDXFENPLHPMGGFPHYGEVNNDFVMIQGLLHG 279
           A TE+D  E  + PMGGFPHYG V  D++MI+G   G
Sbjct: 298 ACTEFDRTEKDITPMGGFPHYGVVKGDYLMIKGCCVG 334


>12_01_0435 +
           3428552-3428636,3429242-3429352,3429434-3429738,
           3429821-3430230,3430323-3430556,3430934-3431378,
           3432300-3432390,3433292-3433518,3433786-3433861,
           3434009-3434134,3434221-3434384
          Length = 757

 Score = 83.8 bits (198), Expect = 1e-16
 Identities = 37/52 (71%), Positives = 43/52 (82%)
 Frame = -1

Query: 295 KGCCMGPKKRIITLRKSLRVHTKRAALEKINLKLIDTSSKFGHGRFQTPADK 140
           KGCC+GPKKR++TLR+SL   T R ALE+I LK IDTSSKFGHGRFQT  +K
Sbjct: 329 KGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFGHGRFQTTDEK 380



 Score = 48.0 bits (109), Expect = 8e-06
 Identities = 20/37 (54%), Positives = 25/37 (67%)
 Frame = -3

Query: 389 AFTEYDXFENPLHPMGGFPHYGEVNNDFVMIQGLLHG 279
           A TE+D  E  + PMGGFPHYG V  D++MI+G   G
Sbjct: 298 ACTEFDRTEKDITPMGGFPHYGVVKGDYLMIKGCCVG 334


>11_01_0456 +
           3522599-3523921,3524005-3524027,3524097-3525265,
           3525373-3525737
          Length = 959

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 21/76 (27%), Positives = 34/76 (44%)
 Frame = +2

Query: 230 CMHTQRLSKSNDTLFRSHAATLESSQSRCLLHHNGGNLPSGVMDSQTXHTQ*MHWFLITL 409
           C   Q +S +N+ L     ++L +  S+  + H GGN  SGV+ S   +   + +F I  
Sbjct: 341 CTRLQMISIANNRLQGHLPSSLGNLSSQLGMLHLGGNQISGVLPSDIENLSSLTYFRIDT 400

Query: 410 PSFWGFLVQ*XKFLVH 457
               G L +    L H
Sbjct: 401 NEITGVLPEWLGSLKH 416


>12_01_1091 +
           11349034-11349438,11350581-11350748,11351189-11351500,
           11351995-11352063,11352177-11352269,11352642-11352844,
           11354783-11355056,11355561-11355606,11355646-11355806
          Length = 576

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 16/43 (37%), Positives = 20/43 (46%)
 Frame = -1

Query: 352 TRWEVSPIMVK*TTTL**FKGCCMGPKKRIITLRKSLRVHTKR 224
           T W+ S +M+  T  +        GP   I  L K L VHTKR
Sbjct: 274 TEWKNSALMISRTLAMAYVMDQIRGPLANIRALAKMLSVHTKR 316


>08_01_0332 +
           2971361-2971439,2971596-2971783,2971985-2972062,
           2972354-2972425,2972513-2972631,2972858-2972942,
           2973096-2973185,2973268-2973369,2973448-2973624,
           2973874-2973954,2974511-2974582,2974662-2974756,
           2974831-2974919,2975016-2975078,2975161-2975204,
           2975554-2975685
          Length = 521

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +2

Query: 2   FFFFFFALSNVYFHGLHLRL 61
           FFFFFF  +N+ FH L+  L
Sbjct: 307 FFFFFFFCANILFHHLNYLL 326


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,641,099
Number of Sequences: 37544
Number of extensions: 313787
Number of successful extensions: 635
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 623
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 633
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2016060588
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)