Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP17_T7_I13
         (734 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0...   137   2e-33
SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ...   134   1e-32
SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit S2|S...    39   8e-04
SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|...    28   1.2  
SPAC27E2.06c |||methionine-tRNA ligase, mitochondrial|Schizosacc...    27   2.8  
SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces...    26   4.8  
SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces pombe...    26   6.4  

>SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0A
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 292

 Score =  137 bits (331), Expect = 2e-33
 Identities = 64/103 (62%), Positives = 77/103 (74%)
 Frame = -2

Query: 631 FREXRXLIVLDPXQDHQPIXEASYVNIPVIALCNTDSPXRFVDIAIPCNTKSSHSIGLMW 452
           +RE R ++V DP  D Q I EAS+VNIPVIALC+TDS    VDIAIP N K   SIGL+W
Sbjct: 118 YREPRLIVVTDPRADAQAIKEASFVNIPVIALCDTDSILNHVDIAIPTNNKGRKSIGLIW 177

Query: 451 WLLAREVLRLRGVLPRDQRWDVVVDLFFYRDPEESEKDEQQAK 323
           +LLAREVLR+RG L R   WDV+ DL+FYRDPEE E++E+  K
Sbjct: 178 YLLAREVLRVRGTLSRSAPWDVMPDLYFYRDPEEVEREEEAKK 220



 Score = 28.7 bits (61), Expect = 0.91
 Identities = 12/17 (70%), Positives = 12/17 (70%)
 Frame = -3

Query: 705 AHTGGTXIXXRFTPGVF 655
           AHTG T I  RFTPG F
Sbjct: 94  AHTGATAIAGRFTPGNF 110


>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
           S0B|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 287

 Score =  134 bits (324), Expect = 1e-32
 Identities = 63/101 (62%), Positives = 76/101 (75%)
 Frame = -2

Query: 631 FREXRXLIVLDPXQDHQPIXEASYVNIPVIALCNTDSPXRFVDIAIPCNTKSSHSIGLMW 452
           +RE R +IV DP  D Q I EAS+VNIPVIALC+TDS    VD+AIP N K   SIGL W
Sbjct: 119 YREPRLIIVTDPRADAQAIKEASFVNIPVIALCDTDSILNHVDVAIPINNKGYKSIGLAW 178

Query: 451 WLLAREVLRLRGVLPRDQRWDVVVDLFFYRDPEESEKDEQQ 329
           +LLAREVLRLRG + R   W+V+ DL+FYRDPEE E++E+Q
Sbjct: 179 YLLAREVLRLRGNISRTTAWEVMPDLYFYRDPEEIEREEEQ 219



 Score = 28.7 bits (61), Expect = 0.91
 Identities = 12/17 (70%), Positives = 12/17 (70%)
 Frame = -3

Query: 705 AHTGGTXIXXRFTPGVF 655
           AHTG T I  RFTPG F
Sbjct: 95  AHTGATAIAGRFTPGNF 111


>SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit
           S2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 263

 Score = 38.7 bits (86), Expect = 8e-04
 Identities = 18/59 (30%), Positives = 31/59 (52%)
 Frame = -2

Query: 613 LIVLDPXQDHQPIXEASYVNIPVIALCNTDSPXRFVDIAIPCNTKSSHSIGLMWWLLAR 437
           +++L+P ++     EA   ++P I + +TD+  R V   IP N  S     L+  LL+R
Sbjct: 183 MVILNPLENKSACLEAQKTHVPTIGIIDTDADPRMVTYPIPANDDSLRCTDLIAGLLSR 241


>SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 194

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 17/36 (47%), Positives = 22/36 (61%), Gaps = 3/36 (8%)
 Frame = +3

Query: 372 NKSTTTSQRWSRG---STPRSLSTSRANNHHIKPIE 470
           N+S+T +++ SR    ST RS STS AN H  K  E
Sbjct: 106 NRSSTNTEKDSRSIAHSTSRSRSTSPANRHRRKEKE 141


>SPAC27E2.06c |||methionine-tRNA ligase,
           mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 539

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = -2

Query: 544 IALCNTDSPXRFVDIAIPCNTKSSHSI 464
           + LC+ +S  RF D+A+  NTK +H I
Sbjct: 85  LQLCDRNSK-RFADLAVAANTKFTHFI 110


>SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 561

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -2

Query: 466 IGLMWWLLAREVLRLRGVLPRDQRWD 389
           IGL W L  REV R + +  R++ WD
Sbjct: 365 IGLKWTLKLREVERKQLLTAREKWWD 390


>SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 564

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
 Frame = -3

Query: 411 FPVTSAGML--WLICSSTVTLKKVKRM 337
           FP  S  ++  WL   +TVTLKK+K +
Sbjct: 480 FPFQSTVLILSWLCVENTVTLKKIKML 506


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,485,144
Number of Sequences: 5004
Number of extensions: 43645
Number of successful extensions: 116
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 347244562
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)