Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP17_T7_I11
         (803 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    34   0.021
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    34   0.021
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    24   5.4  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    25   9.5  

>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 34.3 bits (75), Expect = 0.021
 Identities = 12/21 (57%), Positives = 12/21 (57%)
 Frame = +2

Query: 470 PPPPPXXXXXXXXXPPPPPPP 532
           PPPPP         PPPPPPP
Sbjct: 10  PPPPPPPGFEPPSQPPPPPPP 30



 Score = 31.5 bits (68), Expect = 0.14
 Identities = 11/24 (45%), Positives = 12/24 (50%)
 Frame = +2

Query: 470 PPPPPXXXXXXXXXPPPPPPPXXF 541
           PPPPP          PPPPPP  +
Sbjct: 9   PPPPPPPPGFEPPSQPPPPPPPGY 32


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 34.3 bits (75), Expect = 0.021
 Identities = 12/21 (57%), Positives = 12/21 (57%)
 Frame = +2

Query: 470 PPPPPXXXXXXXXXPPPPPPP 532
           PPPPP         PPPPPPP
Sbjct: 761 PPPPPPPPGVAGAGPPPPPPP 781



 Score = 34.3 bits (75), Expect = 0.021
 Identities = 12/21 (57%), Positives = 12/21 (57%)
 Frame = +2

Query: 470 PPPPPXXXXXXXXXPPPPPPP 532
           PPPPP         PPPPPPP
Sbjct: 762 PPPPPPPGVAGAGPPPPPPPP 782



 Score = 34.3 bits (75), Expect = 0.021
 Identities = 12/21 (57%), Positives = 12/21 (57%)
 Frame = +2

Query: 470 PPPPPXXXXXXXXXPPPPPPP 532
           PPPPP         PPPPPPP
Sbjct: 763 PPPPPPGVAGAGPPPPPPPPP 783



 Score = 26.6 bits (56), Expect = 4.1
 Identities = 10/21 (47%), Positives = 10/21 (47%)
 Frame = +2

Query: 470 PPPPPXXXXXXXXXPPPPPPP 532
           P P P         PPPPPPP
Sbjct: 748 PIPVPPPAPIMGGPPPPPPPP 768


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 23.8 bits (49), Expect(2) = 5.4
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +2

Query: 512 PPPPPPP 532
           PPPPPPP
Sbjct: 311 PPPPPPP 317



 Score = 20.6 bits (41), Expect(2) = 5.4
 Identities = 8/20 (40%), Positives = 8/20 (40%)
 Frame = +2

Query: 470 PPPPPXXXXXXXXXPPPPPP 529
           PPP P         PP  PP
Sbjct: 253 PPPIPPPSNGTVSSPPNSPP 272


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 9/20 (45%), Positives = 9/20 (45%)
 Frame = +3

Query: 474  PPPPXXXXFXXXXPXPPPPP 533
            PPPP         P  PPPP
Sbjct: 1715 PPPPSAPPMPAGPPSAPPPP 1734


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,006,732
Number of Sequences: 5004
Number of extensions: 12127
Number of successful extensions: 206
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 390427050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)