Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP17_T7_I06
         (777 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    29   0.98 
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    28   1.7  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    28   1.7  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    27   2.3  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    26   5.2  

>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 28.7 bits (61), Expect = 0.98
 Identities = 24/104 (23%), Positives = 28/104 (26%), Gaps = 1/104 (0%)
 Frame = -1

Query: 669 PXXKXPPPPPKXPXXRXXRPGXXXXP-GXXPXXPQXXPXKXPQKXXKKXXPTXXPXXPXX 493
           P    PPPPP  P     +      P           P   P    K+  P   P  P  
Sbjct: 184 PSDYNPPPPPPPPPAVEDQAADANEPDDYYSSGRAVSPEIPPTYTPKQADPLPAPPPPPP 243

Query: 492 XXPXKPKXKTXXNPQXXXNPPXXGXAXXXXXXPPKXPXKPPXXP 361
                    T   P    N    G +      PP  P +PP  P
Sbjct: 244 PTLPPQSTNTSQLPMPSRNVNNLG-SQVNIPPPPATPSQPPRPP 286


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 26/84 (30%), Positives = 26/84 (30%)
 Frame = +2

Query: 362 GXXGGFXGXXGGXXXXXXAXPXXGGFXXXWGXFXVXFLGFXGXXLXGXXGXXVGXFFFXX 541
           G  GGF G  GG           GGF    G       GF G    G  G   G   F  
Sbjct: 188 GGFGGFGGGSGGPPPGPGGFGGFGGFGGE-GHHHGGHGGFGG----GPGGFEGGPGGFGG 242

Query: 542 FWGXFXGXFWGXXGXXPGXXXXPG 613
             G F G   G  G   G    PG
Sbjct: 243 GPGGFGGGLGGFGGGPGGFGGGPG 266



 Score = 26.2 bits (55), Expect = 5.2
 Identities = 27/80 (33%), Positives = 27/80 (33%)
 Frame = +1

Query: 463 GFXFGFXGGXXXRXXXAXGGXXFFXLFLGXFXGGXLGGXRXLXXGSXXSGPLXXXXRXFW 642
           G  FG  GG         GG   F  F G   G   GG      G    GP       F 
Sbjct: 187 GGGFGGFGGGSGGPPPGPGGFGGFGGFGGE--GHHHGGH-----GGFGGGP-----GGFE 234

Query: 643 GGGGXFXXGVSGXXGGFXGF 702
           GG G F  G  G  GG  GF
Sbjct: 235 GGPGGFGGGPGGFGGGLGGF 254


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 26/115 (22%), Positives = 28/115 (24%), Gaps = 3/115 (2%)
 Frame = -1

Query: 687 PXXPRNPXXKXPPPPPKXPXXRXXRPGXXXX--PGXX-PXXPQXXPXKXPQKXXKKXXPT 517
           P  PR+       PPP         P       PG   P  P                P+
Sbjct: 363 PPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGRSAPALPPLGNASRTSTPPVPTPPS 422

Query: 516 XXPXXPXXXXPXKPKXKTXXNPQXXXNPPXXGXAXXXXXXPPKXPXKPPXXPXLP 352
             P  P    P  P       P     PP    A       P  P  PP  P  P
Sbjct: 423 LPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPP 477



 Score = 25.4 bits (53), Expect = 9.2
 Identities = 11/35 (31%), Positives = 14/35 (40%)
 Frame = -2

Query: 659 KXPPPPQXXRXXXXRGPEXXXPXXSXRXPPKXPPK 555
           + PPPP   R    + P       S   PP  PP+
Sbjct: 310 RPPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPR 344


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 18/64 (28%), Positives = 19/64 (29%), Gaps = 1/64 (1%)
 Frame = -3

Query: 616 EARXPXXPXXAPXXPPKXPXKXPPKXXK-KKXPHXXPXXAXXXXPXKTQKXNXKXPPXXR 440
           E R P      P  PP  P   PP   K    P   P  A    P K+       P    
Sbjct: 136 ELRPPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLPSAVP 195

Query: 439 KPPP 428
             PP
Sbjct: 196 PMPP 199


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 12/36 (33%), Positives = 12/36 (33%)
 Frame = -1

Query: 699 PXKXPXXPRNPXXKXPPPPPKXPXXRXXRPGXXXXP 592
           P   P  P  P    PPPPP  P      P     P
Sbjct: 746 PAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPP 781


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,386,431
Number of Sequences: 5004
Number of extensions: 14365
Number of successful extensions: 80
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 72
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 375345278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)