Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP17_T7_H23
         (762 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC458.05 |pik3|vps34|phosphatidylinositol 3-kinase Pik3|Schizo...    32   0.078
SPCC622.11 |||LMBR1-like membrane protein|Schizosaccharomyces po...    29   0.55 
SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16 |Schizosa...    26   6.7  
SPBC215.09c |erg10||acetyl-CoA C-acetyltransferase Erg10 |Schizo...    25   8.9  
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar...    25   8.9  

>SPAC458.05 |pik3|vps34|phosphatidylinositol 3-kinase
           Pik3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 801

 Score = 32.3 bits (70), Expect = 0.078
 Identities = 18/45 (40%), Positives = 25/45 (55%)
 Frame = -1

Query: 600 NAMHLLLPCFPDVAVRETAAKLLNEMSDDDLCRVLPQLTQALRHE 466
           +A+ LL P F    VR  A   L   S+++L   L QL QALR++
Sbjct: 336 DALELLSPSFVHPKVRAYAVSRLETASNEELLLYLLQLVQALRYD 380


>SPCC622.11 |||LMBR1-like membrane protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 562

 Score = 29.5 bits (63), Expect = 0.55
 Identities = 20/51 (39%), Positives = 27/51 (52%)
 Frame = +2

Query: 452 LGSYVSCRSACVSCGNTRHRSSSDISFNSLAAVSLTATSGKQGNSKCIALK 604
           L SY S  S+ +S  N R++SSSD   +SL   +    S   G S  IAL+
Sbjct: 249 LESY-SLPSSSISLNNGRNQSSSDFFTSSLTDHAFNPHSSPNGMSNVIALQ 298


>SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 759

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -2

Query: 635 RFTPTVGEPSPLTLCICCCL 576
           +FT  V    PL L +CCC+
Sbjct: 480 KFTDDVRNVCPLNLNVCCCI 499


>SPBC215.09c |erg10||acetyl-CoA C-acetyltransferase Erg10
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 395

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 12/68 (17%), Positives = 29/68 (42%)
 Frame = -1

Query: 357 PQAPHQEFLGINLEDNASENAETDASMSASWRYTLMLRALLVICGENLNKTLLRQQLLVK 178
           P    + F+G  +  N  +N     ++ A    +++   +  +C   +  T+L  Q ++ 
Sbjct: 47  PSDVDEVFMGNVVSANLGQNPARQCALGAGLPRSIVCTTVNKVCASGMKATILGAQTIMT 106

Query: 177 SLCEMAVS 154
              E+ V+
Sbjct: 107 GNAEIVVA 114


>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1131

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 18/60 (30%), Positives = 30/60 (50%)
 Frame = +2

Query: 161 AISHRLLTSNCCRSSVLLRFSPHITSKARSISV*RHEALIDASVSAFSEALSSKFIPRNS 340
           A S   L+SN   SS     + +I + + S+     EAL   S+S+ + + S+ +IP  S
Sbjct: 526 ASSTGALSSNSLSSSTSSVSTSYIPNASSSVYASSTEALSSNSLSSSTSSASTSYIPSAS 585


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,193,337
Number of Sequences: 5004
Number of extensions: 32893
Number of successful extensions: 101
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 365309308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)