Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP17_T7_H23
         (762 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0128 - 12848227-12848619,12848699-12848827,12849108-128492...    31   1.0  
12_02_0709 - 22359705-22360292,22360396-22360560,22360650-223611...    29   4.0  
01_07_0060 - 40814639-40814661,40815449-40816181                       28   9.3  

>08_02_0128 -
           12848227-12848619,12848699-12848827,12849108-12849279,
           12849336-12849488,12850017-12850271,12850846-12851000,
           12853319-12853456,12853545-12853715,12853878-12854063,
           12854169-12854290,12855617-12855752,12856108-12856203,
           12856294-12856356,12856846-12856993,12857324-12857514,
           12857916-12857989,12858039-12858171,12858299-12858460,
           12861649-12861745,12861866-12861962,12863994-12864141
          Length = 1072

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 18/45 (40%), Positives = 24/45 (53%)
 Frame = -1

Query: 600 NAMHLLLPCFPDVAVRETAAKLLNEMSDDDLCRVLPQLTQALRHE 466
           +A+ LL P F +  VR  A  +    SD++L   L QL Q LR E
Sbjct: 390 DALGLLSPVFQNEEVRAYAVGVFERASDEELQCYLLQLVQGLRFE 434


>12_02_0709 -
           22359705-22360292,22360396-22360560,22360650-22361157,
           22361159-22361577,22362261-22362722,22362853-22364415
          Length = 1234

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 8/62 (12%)
 Frame = +1

Query: 460 VRLVSQRLRELRQHAAQVVVR--------HLVQQLGCCFSYGDVRKTRQQQMHSVKGEGS 615
           +R  SQ  R +R HAA++V R           + L C  S  D   T QQ+     G+ +
Sbjct: 216 LRSASQYNRNIRVHAARIVSRLAGEISLASFPEALSCISSLLDTTTTEQQEQQQQDGDSA 275

Query: 616 PT 621
           P+
Sbjct: 276 PS 277


>01_07_0060 - 40814639-40814661,40815449-40816181
          Length = 251

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 7/13 (53%), Positives = 12/13 (92%)
 Frame = +1

Query: 337 LLMWRLWYIRQGM 375
           +L+WR+WY+R G+
Sbjct: 38  MLLWRIWYVRNGI 50


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,820,009
Number of Sequences: 37544
Number of extensions: 229272
Number of successful extensions: 759
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 748
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 759
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2039640244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)