Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP17_T7_H23
(762 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z69903-7|CAA93776.1| 1607|Caenorhabditis elegans Hypothetical pr... 39 0.003
Z69660-1|CAA93489.1| 1607|Caenorhabditis elegans Hypothetical pr... 39 0.003
Y12543-1|CAA73142.1| 897|Caenorhabditis elegans VPS34 homologue... 32 0.51
U97190-7|AAF23185.1| 650|Caenorhabditis elegans Related to yeas... 32 0.51
U97190-6|AAV58893.1| 716|Caenorhabditis elegans Related to yeas... 32 0.51
U97190-5|AAV34807.1| 897|Caenorhabditis elegans Related to yeas... 32 0.51
U97190-4|AAV58894.1| 720|Caenorhabditis elegans Related to yeas... 32 0.51
U97190-3|AAF23184.1| 901|Caenorhabditis elegans Related to yeas... 32 0.51
AL033514-24|CAA22108.1| 2121|Caenorhabditis elegans Hypothetical... 29 4.8
AF003740-9|AAC48140.1| 852|Caenorhabditis elegans Hypothetical ... 28 8.3
>Z69903-7|CAA93776.1| 1607|Caenorhabditis elegans Hypothetical
protein F39B1.1 protein.
Length = 1607
Score = 39.1 bits (87), Expect = 0.003
Identities = 20/46 (43%), Positives = 25/46 (54%)
Frame = -1
Query: 597 AMHLLLPCFPDVAVRETAAKLLNEMSDDDLCRVLPQLTQALRHETY 460
AM LLP +PD +R A + L S D L +PQ +ALR E Y
Sbjct: 857 AMEFLLPKYPDERIRAHAVQSLARGSTDFLYHTIPQFIEALRFELY 902
>Z69660-1|CAA93489.1| 1607|Caenorhabditis elegans Hypothetical
protein F39B1.1 protein.
Length = 1607
Score = 39.1 bits (87), Expect = 0.003
Identities = 20/46 (43%), Positives = 25/46 (54%)
Frame = -1
Query: 597 AMHLLLPCFPDVAVRETAAKLLNEMSDDDLCRVLPQLTQALRHETY 460
AM LLP +PD +R A + L S D L +PQ +ALR E Y
Sbjct: 857 AMEFLLPKYPDERIRAHAVQSLARGSTDFLYHTIPQFIEALRFELY 902
>Y12543-1|CAA73142.1| 897|Caenorhabditis elegans VPS34 homologue
protein.
Length = 897
Score = 31.9 bits (69), Expect = 0.51
Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Frame = -1
Query: 600 NAMHLLLPCFPDVAVRE-TAAKLLNEMSDDDLCRVLPQLTQALRHE 466
+A+ LL F AVR + ++LL S + + LPQL QAL++E
Sbjct: 378 DALELLSSAFTHPAVRAYSVSRLLEAASPEQVLLYLPQLVQALKYE 423
>U97190-7|AAF23185.1| 650|Caenorhabditis elegans Related to yeast
vacuolar proteinsorting factor protein 34, isoform b
protein.
Length = 650
Score = 31.9 bits (69), Expect = 0.51
Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Frame = -1
Query: 600 NAMHLLLPCFPDVAVRE-TAAKLLNEMSDDDLCRVLPQLTQALRHE 466
+A+ LL F AVR + ++LL S + + LPQL QAL++E
Sbjct: 131 DALELLSSAFTHPAVRAYSVSRLLEAASPEQVLLYLPQLVQALKYE 176
>U97190-6|AAV58893.1| 716|Caenorhabditis elegans Related to yeast
vacuolar proteinsorting factor protein 34, isoform d
protein.
Length = 716
Score = 31.9 bits (69), Expect = 0.51
Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Frame = -1
Query: 600 NAMHLLLPCFPDVAVRE-TAAKLLNEMSDDDLCRVLPQLTQALRHE 466
+A+ LL F AVR + ++LL S + + LPQL QAL++E
Sbjct: 378 DALELLSSAFTHPAVRAYSVSRLLEAASPEQVLLYLPQLVQALKYE 423
>U97190-5|AAV34807.1| 897|Caenorhabditis elegans Related to yeast
vacuolar proteinsorting factor protein 34, isoform c
protein.
Length = 897
Score = 31.9 bits (69), Expect = 0.51
Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Frame = -1
Query: 600 NAMHLLLPCFPDVAVRE-TAAKLLNEMSDDDLCRVLPQLTQALRHE 466
+A+ LL F AVR + ++LL S + + LPQL QAL++E
Sbjct: 378 DALELLSSAFTHPAVRAYSVSRLLEAASPEQVLLYLPQLVQALKYE 423
>U97190-4|AAV58894.1| 720|Caenorhabditis elegans Related to yeast
vacuolar proteinsorting factor protein 34, isoform e
protein.
Length = 720
Score = 31.9 bits (69), Expect = 0.51
Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Frame = -1
Query: 600 NAMHLLLPCFPDVAVRE-TAAKLLNEMSDDDLCRVLPQLTQALRHE 466
+A+ LL F AVR + ++LL S + + LPQL QAL++E
Sbjct: 382 DALELLSSAFTHPAVRAYSVSRLLEAASPEQVLLYLPQLVQALKYE 427
>U97190-3|AAF23184.1| 901|Caenorhabditis elegans Related to yeast
vacuolar proteinsorting factor protein 34, isoform a
protein.
Length = 901
Score = 31.9 bits (69), Expect = 0.51
Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Frame = -1
Query: 600 NAMHLLLPCFPDVAVRE-TAAKLLNEMSDDDLCRVLPQLTQALRHE 466
+A+ LL F AVR + ++LL S + + LPQL QAL++E
Sbjct: 382 DALELLSSAFTHPAVRAYSVSRLLEAASPEQVLLYLPQLVQALKYE 427
>AL033514-24|CAA22108.1| 2121|Caenorhabditis elegans Hypothetical
protein Y75B8A.24 protein.
Length = 2121
Score = 28.7 bits (61), Expect = 4.8
Identities = 16/47 (34%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
Frame = -1
Query: 597 AMHLLLP-CFPDVAVR-ETAAKLLNEMSDDDLCRVLPQLTQALRHET 463
A+ LL P +P + + A ++L S D+L +PQ+ QA+R++T
Sbjct: 1632 ALSLLTPRIYPMHPISMQYAVRVLRSYSADELLLYIPQIVQAVRYDT 1678
>AF003740-9|AAC48140.1| 852|Caenorhabditis elegans Hypothetical
protein C41D11.6 protein.
Length = 852
Score = 27.9 bits (59), Expect = 8.3
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = -1
Query: 366 PNIPQAPHQEFLGINLEDNASENAETDASMSASWRYTLMLR 244
PN+P P Q + INL +N +N + + + R+ M R
Sbjct: 72 PNVPILPPQNQIPINLNNNNHDNEQERERVPNNMRFLRMQR 112
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,429,316
Number of Sequences: 27780
Number of extensions: 193077
Number of successful extensions: 574
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 565
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 574
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1819579054
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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