Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP17_T7_H18
(758 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0381 + 28878811-28879120,28880189-28880331,28880753-288815... 32 0.43
12_02_1120 - 26228618-26229403 30 1.7
02_03_0287 + 17320242-17320481,17323422-17324767,17325124-17325142 30 1.7
01_06_0140 - 26881282-26881290,26882027-26882128,26882816-268829... 30 1.7
05_04_0389 - 20845490-20845600,20845697-20846006,20846097-208462... 29 5.3
01_01_1137 + 9017211-9018584 29 5.3
09_02_0201 + 5728377-5728584,5729044-5729153,5729231-5729286,572... 28 9.3
08_02_0707 - 20212190-20214592 28 9.3
03_02_0599 - 9730204-9730314,9730766-9731549,9731631-9732051,973... 28 9.3
>01_06_0381 +
28878811-28879120,28880189-28880331,28880753-28881532,
28882568-28883968
Length = 877
Score = 32.3 bits (70), Expect = 0.43
Identities = 16/41 (39%), Positives = 21/41 (51%)
Frame = +2
Query: 449 TEEPNREHLSSTHKHALHRKNLHPPAEPEHRRIARHERTGR 571
+ E EH SS +H HR + H + EHR RH+R R
Sbjct: 778 SSEDEHEHRSSKSRHR-HRDDYHYHEDDEHRSSHRHQRDHR 817
Score = 31.1 bits (67), Expect = 1.00
Identities = 19/52 (36%), Positives = 23/52 (44%)
Frame = +2
Query: 389 SHHANYNFTGSTSLTRCYSHTEEPNREHLSSTHKHALHRKNLHPPAEPEHRR 544
S NY+ S +R H E +R H S HKH L R + EP H R
Sbjct: 725 SDEENYDSEESYKHSR-KKHRSEDSRAHTSDVHKHKLKRHS--KDLEPRHHR 773
>12_02_1120 - 26228618-26229403
Length = 261
Score = 30.3 bits (65), Expect = 1.7
Identities = 15/47 (31%), Positives = 21/47 (44%)
Frame = -3
Query: 321 GGETSAVAAHPVRENRADRLDGTEAGRRVRQTTRSRLQHELPILEPP 181
GGE AA P R + + T R R+ +RS H ++ PP
Sbjct: 140 GGEVVQAAARPTRLTASSEAERTTTMARRRRRSRSHSSHHALMMTPP 186
>02_03_0287 + 17320242-17320481,17323422-17324767,17325124-17325142
Length = 534
Score = 30.3 bits (65), Expect = 1.7
Identities = 20/62 (32%), Positives = 25/62 (40%)
Frame = +3
Query: 285 GLGGPQPRKSHLRLPVQTHKTFYHYANFLPQQILPATTQTTILRVPPLLHDVTPTLRNPT 464
GL P K H+ F +FLP +I L+VPP LH V P P
Sbjct: 57 GLLSFDPEKRLTAAEAMEHRWFAQGFHFLPARIPMDGPSGWFLKVPPPLHTVDPPGSPPP 116
Query: 465 AN 470
A+
Sbjct: 117 AS 118
>01_06_0140 -
26881282-26881290,26882027-26882128,26882816-26882924,
26883712-26883860,26883941-26884043,26884635-26884810,
26885004-26885066,26885258-26885346,26885428-26885538,
26885610-26885744,26886415-26886580,26886788-26886856,
26886943-26887230,26888612-26888866
Length = 607
Score = 30.3 bits (65), Expect = 1.7
Identities = 17/43 (39%), Positives = 21/43 (48%)
Frame = -3
Query: 576 IRRPVRSCLAMRRCSGSAGGCRFFR*SACLCVLDKCSRLGSSV 448
+R R A R C GSAG R R SA V+ + RL + V
Sbjct: 31 LRPAARLSFAPRWCGGSAGAARARRESAVTSVISRAPRLDAEV 73
>05_04_0389 -
20845490-20845600,20845697-20846006,20846097-20846242,
20846319-20846426,20846508-20846615,20846997-20847109,
20847340-20847437,20847530-20847714,20847811-20847953,
20848293-20848377,20848486-20848624,20848686-20848780,
20848894-20849037,20849114-20849206,20849310-20849376,
20849529-20849641,20849750-20849845,20853885-20854058
Length = 775
Score = 28.7 bits (61), Expect = 5.3
Identities = 18/57 (31%), Positives = 24/57 (42%)
Frame = +1
Query: 250 LRTVEAICPVLADWVGRNRGSLTSGYLCRLTRHFTTMQTSYRNKSYQPPRKLQFYGF 420
LR E I +A ++ R +GS S Y+ +F SY SY L Y F
Sbjct: 281 LRAPEDIAFAVALFIARKKGSFVSYYMYHGGTNFGRFAASYVTTSYYDGAPLDEYDF 337
>01_01_1137 + 9017211-9018584
Length = 457
Score = 28.7 bits (61), Expect = 5.3
Identities = 30/91 (32%), Positives = 39/91 (42%), Gaps = 7/91 (7%)
Frame = -3
Query: 372 VRSLHSGKMSCESAQVAGGETSAVAAHPVREN-RADRLDGTEA--GRRVRQTTRSRLQHE 202
++ L SG + + +VAGG V AHP+ E+ R R+ G A G TR +
Sbjct: 264 IKRLQSGIRARAAGKVAGGRVVRVEAHPIPEHPRPRRVVGRVALVGDAAGYVTRCSGE-- 321
Query: 201 LPILEPPRSGCTCARVR----RLVGDCAVAG 121
I RSG C R RL G AG
Sbjct: 322 -GIYFAARSGRLCGRAMADEWRLTGAVTEAG 351
>09_02_0201 +
5728377-5728584,5729044-5729153,5729231-5729286,
5729396-5729480,5729550-5729597,5729723-5729797,
5729893-5730004,5730371-5730536,5730579-5730630,
5730729-5730786,5731029-5731127,5731219-5731349
Length = 399
Score = 27.9 bits (59), Expect = 9.3
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = -3
Query: 219 SRLQHELPILEPPRSGCTCARVRRLVGDCAVAGPTRDVNVCF 94
S LQH LPI+ P RS +C+ R + G + C+
Sbjct: 220 SLLQHFLPIMNPVRSESSCSSSRVIAISACFTGMSLICRGCY 261
>08_02_0707 - 20212190-20214592
Length = 800
Score = 27.9 bits (59), Expect = 9.3
Identities = 16/56 (28%), Positives = 26/56 (46%)
Frame = +2
Query: 389 SHHANYNFTGSTSLTRCYSHTEEPNREHLSSTHKHALHRKNLHPPAEPEHRRIARH 556
SHH +++ S + S TE +E+ S H H H + H +E H++ H
Sbjct: 549 SHHHDHHHDSSNEESHHNSLTENSCKENHSHCHGHDHHHHHHHDHSE-HHQQSGDH 603
>03_02_0599 -
9730204-9730314,9730766-9731549,9731631-9732051,
9732139-9732385,9733730-9733921,9734071-9734204,
9734316-9734477,9736162-9736200,9737507-9737825
Length = 802
Score = 27.9 bits (59), Expect = 9.3
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = +2
Query: 437 CYSHTEEPNREHLSSTHKHALHRKNLHPPAEPEHR 541
C + T+EP+R+ + T L + H P E E R
Sbjct: 5 CEAGTDEPSRDDVKGTGNGILENGHSHKPEEEEWR 39
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,913,177
Number of Sequences: 37544
Number of extensions: 446602
Number of successful extensions: 1340
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1303
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1340
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2027850416
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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