Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP17_T7_H18
         (758 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   2.4  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          23   4.1  
AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    22   7.2  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    22   7.2  
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    21   9.5  
AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc fi...    21   9.5  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    21   9.5  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 20/84 (23%), Positives = 33/84 (39%), Gaps = 2/84 (2%)
 Frame = +2

Query: 317 PPATCADSQDILPLCKLLTATNLTSHHANYNFTGSTSLTRCYSHTEEPNREHLSSTHKH- 493
           PPA    S   LP     T T  T+  A    T +T+ T            HL + H H 
Sbjct: 96  PPA----SSTSLPATITTTTTTTTTTTATAAATATTTATGLIKQETLQRHHHLQNHHHHL 151

Query: 494 -ALHRKNLHPPAEPEHRRIARHER 562
            +   ++ H P + + ++  R ++
Sbjct: 152 QSTAVQDHHRPYQQQQQQQQRQQQ 175


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 16/73 (21%), Positives = 22/73 (30%)
 Frame = +2

Query: 317 PPATCADSQDILPLCKLLTATNLTSHHANYNFTGSTSLTRCYSHTEEPNREHLSSTHKHA 496
           PP+    S    P    +  T L  HH  Y    +T   R          +   S   + 
Sbjct: 130 PPSVSLSSPPREPGTPRINFTKLKRHHPRYKRPRTTFEPRATDSRHYDRYKEEESNENYN 189

Query: 497 LHRKNLHPPAEPE 535
              K  H   +PE
Sbjct: 190 WEHKETHIDWQPE 202


>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = +3

Query: 6   FFFFLRLHSDLEW 44
           F+FF+ + S+L W
Sbjct: 86  FYFFMSMRSELPW 98


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 7/39 (17%), Positives = 18/39 (46%)
 Frame = +2

Query: 446 HTEEPNREHLSSTHKHALHRKNLHPPAEPEHRRIARHER 562
           H  +  ++HL +  +H ++++     A  +  +   H R
Sbjct: 186 HQSQAQQQHLQAHEQHMMYQQQQQSQAASQQSQPGMHPR 224


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 10/29 (34%), Positives = 13/29 (44%)
 Frame = +3

Query: 468 NTCQARTSTHFTGKTCIRLRNPNTXASPD 554
           N+C      +F G     + NPNT  S D
Sbjct: 97  NSCYQERYEYFPGFPGEEMWNPNTNISED 125


>AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc
           finger domain-Z2 isoform protein.
          Length = 71

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 6/16 (37%), Positives = 10/16 (62%)
 Frame = -2

Query: 415 RKIVVCVVAGKICCGK 368
           +K+  C + GK+ C K
Sbjct: 3   KKLFTCQLCGKVLCSK 18


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 10/29 (34%), Positives = 13/29 (44%)
 Frame = +3

Query: 468 NTCQARTSTHFTGKTCIRLRNPNTXASPD 554
           N+C      +F G     + NPNT  S D
Sbjct: 97  NSCYQERYEYFPGFPGEEMWNPNTNISED 125


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 203,428
Number of Sequences: 438
Number of extensions: 4329
Number of successful extensions: 10
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23875740
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)