Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP17_T7_H13
(724 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0215 - 1714224-1714364,1714795-1715187,1715279-1715377,171... 134 9e-32
12_01_0211 - 1601129-1601272,1601670-1602062,1602142-1602240,160... 133 1e-31
11_01_0210 - 1647922-1648065,1648459-1648851,1648930-1649028,164... 133 1e-31
03_03_0258 - 15905847-15905990,15906088-15906244,15906374-159065... 31 0.93
03_02_0966 + 12783515-12783901 30 2.1
07_01_0115 + 851505-852368,852611-852730,853000-853020,853253-85... 29 3.7
>08_01_0215 -
1714224-1714364,1714795-1715187,1715279-1715377,
1716248-1716316,1716408-1716665
Length = 319
Score = 134 bits (323), Expect = 9e-32
Identities = 74/180 (41%), Positives = 97/180 (53%)
Frame = -2
Query: 666 FFXXXFIPTKISRVLLKSSTMYTX*SPVXKVGAXEATLLNMLNISPFSYGLVVKQVYDSG 487
FF IPTKI++ ++ T KVG+ E+ LL L I PFSYGLV+ VYDSG
Sbjct: 140 FFQVLNIPTKINKGTVEIITPVELIKKGDKVGSSESALLAKLGIRPFSYGLVITNVYDSG 199
Query: 486 TIFAPEILDIKPEDLRAKFQAGVANVAALSLAIGYPTIASAPHSIANGFKNLLXXXXXXX 307
++F+PE+LD+ +DL KF +GV+ VA++SLAI YPTIA+APH NG+KN+L
Sbjct: 200 SVFSPEVLDLTEDDLMEKFASGVSMVASVSLAISYPTIAAAPHMFLNGYKNVLAVAVETE 259
Query: 306 XXXXXXXXIKEFIKDPSKFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDDDMGFGLFD 127
IKE++KDPSKF SD D+G LFD
Sbjct: 260 YSYPHADKIKEYLKDPSKFAVAAPVAADSGAAAPSAAKEEEKKEEPEEESDGDLGMSLFD 319
Score = 33.5 bits (73), Expect = 0.17
Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = -1
Query: 721 PXQLSFPPXXTGLGPEKXXFXXXF-YPYQDFKGTIEIINDVHXLKPG 584
P + PP TGL P + F P + KGT+EII V +K G
Sbjct: 121 PVDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKG 167
>12_01_0211 -
1601129-1601272,1601670-1602062,1602142-1602240,
1602920-1602988,1603071-1603328
Length = 320
Score = 133 bits (322), Expect = 1e-31
Identities = 68/139 (48%), Positives = 89/139 (64%)
Frame = -2
Query: 666 FFXXXFIPTKISRVLLKSSTMYTX*SPVXKVGAXEATLLNMLNISPFSYGLVVKQVYDSG 487
FF IPTKI++ ++ T KVG+ E+ LL L I PFSYGLV+ VYDSG
Sbjct: 140 FFQVLNIPTKINKGTVEIITPVELIKKGDKVGSSESALLAKLGIRPFSYGLVITNVYDSG 199
Query: 486 TIFAPEILDIKPEDLRAKFQAGVANVAALSLAIGYPTIASAPHSIANGFKNLLXXXXXXX 307
++F+PE+LD+ EDL KF +GV+ VA++SLAI YPTIA+APH NG+KN+L
Sbjct: 200 SVFSPEVLDLTEEDLMEKFASGVSMVASVSLAISYPTIAAAPHMFLNGYKNVLAVAVETE 259
Query: 306 XXXXXXXXIKEFIKDPSKF 250
IKE++KDPSKF
Sbjct: 260 YSYPHADKIKEYLKDPSKF 278
Score = 33.5 bits (73), Expect = 0.17
Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = -1
Query: 721 PXQLSFPPXXTGLGPEKXXFXXXF-YPYQDFKGTIEIINDVHXLKPG 584
P + PP TGL P + F P + KGT+EII V +K G
Sbjct: 121 PVDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKG 167
>11_01_0210 -
1647922-1648065,1648459-1648851,1648930-1649028,
1649706-1649774,1649877-1650134
Length = 320
Score = 133 bits (322), Expect = 1e-31
Identities = 68/139 (48%), Positives = 89/139 (64%)
Frame = -2
Query: 666 FFXXXFIPTKISRVLLKSSTMYTX*SPVXKVGAXEATLLNMLNISPFSYGLVVKQVYDSG 487
FF IPTKI++ ++ T KVG+ E+ LL L I PFSYGLV+ VYDSG
Sbjct: 140 FFQVLNIPTKINKGTVEIITPVELIKKGDKVGSSESALLAKLGIRPFSYGLVITNVYDSG 199
Query: 486 TIFAPEILDIKPEDLRAKFQAGVANVAALSLAIGYPTIASAPHSIANGFKNLLXXXXXXX 307
++F+PE+LD+ EDL KF +GV+ VA++SLAI YPTIA+APH NG+KN+L
Sbjct: 200 SVFSPEVLDLTEEDLMEKFASGVSMVASVSLAISYPTIAAAPHMFLNGYKNVLAVAVETE 259
Query: 306 XXXXXXXXIKEFIKDPSKF 250
IKE++KDPSKF
Sbjct: 260 YSYPHADKIKEYLKDPSKF 278
Score = 33.5 bits (73), Expect = 0.17
Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = -1
Query: 721 PXQLSFPPXXTGLGPEKXXFXXXF-YPYQDFKGTIEIINDVHXLKPG 584
P + PP TGL P + F P + KGT+EII V +K G
Sbjct: 121 PVDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKG 167
>03_03_0258 -
15905847-15905990,15906088-15906244,15906374-15906504,
15906991-15907126,15907193-15907464,15907874-15908169,
15908279-15908646,15908922-15908987,15909064-15909129,
15909226-15909297,15909391-15909459,15909549-15909620,
15909708-15909776,15909874-15909945,15910046-15910178,
15911223-15911361
Length = 753
Score = 31.1 bits (67), Expect = 0.93
Identities = 16/36 (44%), Positives = 21/36 (58%)
Frame = +2
Query: 488 PESYTCLTTRPYENGEMFNMLRRVASXAPTLXTGLQ 595
PE LT RP +G+ FN LR ++ +PT GLQ
Sbjct: 358 PEKNEPLTLRPIASGK-FNQLRTISIISPTAKEGLQ 392
>03_02_0966 + 12783515-12783901
Length = 128
Score = 29.9 bits (64), Expect = 2.1
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = -2
Query: 426 AGVANVAALSLAIGYPTIASAPHSIANGFKNLL 328
AG+A VAA++ A+ P +A A +++ KN L
Sbjct: 67 AGIAAVAAVAAALAVPEVAEAAPALSPSLKNFL 99
>07_01_0115 +
851505-852368,852611-852730,853000-853020,853253-853369,
853466-853555,853730-853837,853897-853932,853933-854022
Length = 481
Score = 29.1 bits (62), Expect = 3.7
Identities = 16/39 (41%), Positives = 20/39 (51%)
Frame = -2
Query: 453 PEDLRAKFQAGVANVAALSLAIGYPTIASAPHSIANGFK 337
PE RA F AG A V A +P A+A +S GF+
Sbjct: 35 PEKKRASFAAGAAAVRAKVCDARWPASAAAANSAPYGFR 73
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,838,084
Number of Sequences: 37544
Number of extensions: 283789
Number of successful extensions: 604
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 590
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 598
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1886372480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -